View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1429_high_6 (Length: 554)
Name: NF1429_high_6
Description: NF1429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1429_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 25 - 550
Target Start/End: Complemental strand, 14726273 - 14725733
Alignment:
| Q |
25 |
gcaaaccgacatggctgcataaccaaatgctgtctagcatctaataacactttcagaccaccctactagaaaggttcgatagtaacnnnnnnnnggttcg |
124 |
Q |
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| T |
14726273 |
gcaaaccgacatggctgcataaccaaatgctctctagcatctaataacactttcagaccaccctactagaaaggttcgatggtaacaaaaaaaaggtttg |
14726174 |
T |
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| Q |
125 |
aaacacatttctnnnnnnngccttacaagttacaaatacaatta-------------ttacattgtatagacaatttcctcacgataacatggacaaaat |
211 |
Q |
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|||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
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| T |
14726173 |
aaacacatttctaaaaaaagctttacaagttacaaatacaattagcacaaaactacattacattgtatagacaatttcctcacgaaaacatggacaaaat |
14726074 |
T |
|
| Q |
212 |
cacatgnnnnnnntatatattgatccatggacaatggtgatttaactcaggataagtaagagcttatttcgaggaaaagttgcgattttgaaacaaaata |
311 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14726073 |
cacatgaaaaaaatatatattgatccatggacaatggtgatttaactcaggataagtaagagcttatttcgaggaaaagttgcgattttgaaacaaaata |
14725974 |
T |
|
| Q |
312 |
atgacttatagaagtttacgagcgtaacattttgagaaaaacctaaaaaatgtgattctccctaaaatcattgtttttagccaattgaagaaagatcnnn |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
14725973 |
atgacttatagaagtttacgagcgtaacattttgagaaaaacctaaaaaatgtgattctcccaaaaatcattgtttttagccaattgaagaaagatcaaa |
14725874 |
T |
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| Q |
412 |
nnnngagaaagaaagga--agtgttataccggttggagcagggcgtttactggaggaagccattgatgatatttggaagcgtttaggaagaagaagagtg |
509 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
14725873 |
aaaagagaaagaaaggaagagtgttataccggttggagcagggcgtttactggaggaagccattgatgaaatttggaagcgtttaggaagaagaagagtg |
14725774 |
T |
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| Q |
510 |
agagaatagggttttgaggattgaaatgaagaatgtgagtg |
550 |
Q |
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| T |
14725773 |
agagaatagggttttgaggattgaaatgaagaatgtgagtg |
14725733 |
T |
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