View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1429_high_8 (Length: 550)

Name: NF1429_high_8
Description: NF1429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1429_high_8
NF1429_high_8
[»] scaffold0054 (2 HSPs)
scaffold0054 (99-533)||(43800-44234)
scaffold0054 (12-40)||(44292-44320)
[»] chr7 (2 HSPs)
chr7 (339-437)||(45627659-45627756)
chr7 (339-437)||(30783839-30783936)
[»] chr5 (2 HSPs)
chr5 (371-437)||(31183566-31183630)
chr5 (382-437)||(22070172-22070228)
[»] chr6 (2 HSPs)
chr6 (457-533)||(24416442-24416519)
chr6 (318-382)||(12155603-12155667)
[»] chr4 (1 HSPs)
chr4 (393-437)||(3499072-3499116)
[»] scaffold0209 (1 HSPs)
scaffold0209 (382-437)||(15215-15270)
[»] scaffold0028 (1 HSPs)
scaffold0028 (382-437)||(20741-20796)
[»] chr2 (6 HSPs)
chr2 (376-437)||(30054041-30054102)
chr2 (376-437)||(30145084-30145145)
chr2 (370-412)||(17708946-17708988)
chr2 (318-359)||(17708948-17708989)
chr2 (322-359)||(30054038-30054075)
chr2 (322-359)||(30145081-30145118)
[»] chr1 (1 HSPs)
chr1 (318-369)||(9322861-9322912)
[»] scaffold0264 (1 HSPs)
scaffold0264 (318-359)||(24087-24128)


Alignment Details
Target: scaffold0054 (Bit Score: 411; Significance: 0; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 99 - 533
Target Start/End: Complemental strand, 44234 - 43800
Alignment:
Q  99 tatagcctagaaatgaagaggccggaggtctgagattaaatggaaaaaggaatgggtcgagaaatgagattgaggaacaatgaagaaaaggaaccgagca 198  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  44234 tatagcctagaaatgaagaggtcggaggtctgagattaaatggaaaaaggaatggatcgagaaatgagattgaggaacaatgaagaaaaggaaccgagca 44135  T
Q  199 gtggttgaaaaggaaccgagaaatgagattgagagtgagggacgaaatgctaccattgagccagaggttagtgtgatggtgagattgagcgaggggtttg 298  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  44134 gtggttgaaaaggaaccgagaaatgagattgagagtgaggaacgaaatgctaccattgagccagaggttagtgtgatggtgagattgagccaggggtttg 44035  T
Q  299 cgattgagattgtgccagcggtggtagagatttaggttttaatttggggggaagtgagattatgggtgagtgtggtggagatttaggtttcagattgagg 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44034 cgattgagattgtgccagcggtggtagagatttaggttttaatttggggggaagtgagattatgggtgagtgtggtggagatttaggtttcagattgagg 43935  T
Q  399 gaaagtgagattgaggaataaaattgggttttagggtttcataaattggctcatgagtcatgacagactttcataaattggtattgcctgaacttcatct 498  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43934 gaaagtgagattgaggaataaaattgggttttagggtttcataaattggctcatgagtcatgacagactttcataaattggtattgcctgaacttcatct 43835  T
Q  499 gattctaatcaacagaatcacatgagtccagttac 533  Q
    |||||||||||| |||||||||||| |||||||||    
T  43834 gattctaatcaatagaatcacatgaatccagttac 43800  T

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Target: scaffold0054; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 12 - 40
Target Start/End: Complemental strand, 44320 - 44292
Alignment:
Q  12 atgaaattatagccacactcaaatcaaca 40  Q
    |||||||||||||||||||||||||||||    
T  44320 atgaaattatagccacactcaaatcaaca 44292  T

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Target: chr7 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 339 - 437
Target Start/End: Complemental strand, 45627756 - 45627659
Alignment:
Q  339 aatttggggggaagtgagattatgggtgagtgtggtggagatttaggtttcagattgagggaaagtgagattgaggaataaaattgggttttagggttt 437  Q
    |||||||||| ||||| |||| |||||||| |||||||| |||||||| |||||||| |||||| ||| ||||| |||||||||||| |||||||||||    
T  45627756 aatttgggggaaagtg-gattgtgggtgagagtggtggaaatttaggtgtcagattgggggaaaatgaaattgatgaataaaattggattttagggttt 45627659  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 339 - 437
Target Start/End: Complemental strand, 30783936 - 30783839
Alignment:
Q  339 aatttggggggaagtgagattatgggtgagtgtggtggagatttaggtttcagattgagggaaagtgagattgaggaataaaattgggttttagggttt 437  Q
    |||||||||| ||||| |||| |||||||| | |||||| |||||||| | |||||| | |||||||| ||||| |||||||||||| |||||||||||    
T  30783936 aatttgggggaaagtg-gattgtgggtgagagaggtggaaatttaggtgtgagattgggcgaaagtgaaattgatgaataaaattggattttagggttt 30783839  T

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Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 371 - 437
Target Start/End: Complemental strand, 31183630 - 31183566
Alignment:
Q  371 tggtggagatttaggtttcagattgagggaaagtgagattgaggaataaaattgggttttagggttt 437  Q
    |||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  31183630 tggtagagatttaggtttcagattg-gggaaagtgagattgag-aataaaattgggttttagggttt 31183566  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 382 - 437
Target Start/End: Original strand, 22070172 - 22070228
Alignment:
Q  382 taggtttcagattgagggaaagtgagattg-aggaataaaattgggttttagggttt 437  Q
    |||||||||||||||| ||||||||||||| |  || |||||| |||||||||||||    
T  22070172 taggtttcagattgagagaaagtgagattgaaaaaaaaaaattaggttttagggttt 22070228  T

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Target: chr6 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 457 - 533
Target Start/End: Complemental strand, 24416519 - 24416442
Alignment:
Q  457 catgacagactttcataaattggtatt-gcctgaacttcatctgattctaatcaacagaatcacatgagtccagttac 533  Q
    ||||||||||||| ||||||||||||| |  |||||||||| |||||||||||||||||||||||| | |||||||||    
T  24416519 catgacagacttttataaattggtatttggttgaacttcatatgattctaatcaacagaatcacataaatccagttac 24416442  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 318 - 382
Target Start/End: Original strand, 12155603 - 12155667
Alignment:
Q  318 ggtggtagagatttaggttttaatttggggggaagtgagattatgggtgagtgtggtggagattt 382  Q
    |||| |||||||| |||||| ||| |||||| |||||||||| ||||| || |||||||||||||    
T  12155603 ggtgatagagattaaggtttcaatctgggggaaagtgagattgtgggtaagagtggtggagattt 12155667  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 393 - 437
Target Start/End: Original strand, 3499072 - 3499116
Alignment:
Q  393 ttgagggaaagtgagattgaggaataaaattgggttttagggttt 437  Q
    |||||||||||||||||||||||||||||| ||||||||||||||    
T  3499072 ttgagggaaagtgagattgaggaataaaatggggttttagggttt 3499116  T

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Target: scaffold0209 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 382 - 437
Target Start/End: Complemental strand, 15270 - 15215
Alignment:
Q  382 taggtttcagattgagggaaagtgagattgaggaataaaattgggttttagggttt 437  Q
    |||||||||||||||| |||||||||||||| ||| |||||| |||||||||||||    
T  15270 taggtttcagattgagagaaagtgagattgaagaaaaaaattaggttttagggttt 15215  T

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Target: scaffold0028 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 382 - 437
Target Start/End: Original strand, 20741 - 20796
Alignment:
Q  382 taggtttcagattgagggaaagtgagattgaggaataaaattgggttttagggttt 437  Q
    |||||||||||||||| |||||||||||||| ||| |||||| |||||||||||||    
T  20741 taggtttcagattgagagaaagtgagattgaagaaaaaaattaggttttagggttt 20796  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 376 - 437
Target Start/End: Original strand, 30054041 - 30054102
Alignment:
Q  376 gagatttaggtttcagattgagggaaagtgagattgaggaataaaattgggttttagggttt 437  Q
    ||||||||||||| |  ||| |||||||| |||||| |||||||||||||||||||||||||    
T  30054041 gagatttaggttttaatttgggggaaagttagattgtggaataaaattgggttttagggttt 30054102  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 376 - 437
Target Start/End: Original strand, 30145084 - 30145145
Alignment:
Q  376 gagatttaggtttcagattgagggaaagtgagattgaggaataaaattgggttttagggttt 437  Q
    ||||||||||||| |  ||| |||||||| |||||| |||||||||||||||||||||||||    
T  30145084 gagatttaggttttaatttgggggaaagttagattgtggaataaaattgggttttagggttt 30145145  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 370 - 412
Target Start/End: Complemental strand, 17708988 - 17708946
Alignment:
Q  370 gtggtggagatttaggtttcagattgagggaaagtgagattga 412  Q
    ||||| ||||||||||||||| |||| ||||||||||||||||    
T  17708988 gtggtagagatttaggtttcaaattgggggaaagtgagattga 17708946  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 359
Target Start/End: Complemental strand, 17708989 - 17708948
Alignment:
Q  318 ggtggtagagatttaggttttaatttggggggaagtgagatt 359  Q
    |||||||||||||||||||| || ||||||| ||||||||||    
T  17708989 ggtggtagagatttaggtttcaaattgggggaaagtgagatt 17708948  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 359
Target Start/End: Original strand, 30054038 - 30054075
Alignment:
Q  322 gtagagatttaggttttaatttggggggaagtgagatt 359  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  30054038 gtagagatttaggttttaatttgggggaaagttagatt 30054075  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 359
Target Start/End: Original strand, 30145081 - 30145118
Alignment:
Q  322 gtagagatttaggttttaatttggggggaagtgagatt 359  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  30145081 gtagagatttaggttttaatttgggggaaagttagatt 30145118  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 318 - 369
Target Start/End: Complemental strand, 9322912 - 9322861
Alignment:
Q  318 ggtggtagagatttaggttttaatttggggggaagtgagattatgggtgagt 369  Q
    ||||||||||||| |||||| |||||||||| |||||||||| |||||||||    
T  9322912 ggtggtagagattaaggtttcaatttgggggaaagtgagattgtgggtgagt 9322861  T

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Target: scaffold0264 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 318 - 359
Target Start/End: Complemental strand, 24128 - 24087
Alignment:
Q  318 ggtggtagagatttaggttttaatttggggggaagtgagatt 359  Q
    |||||||||||||||||||| |||||||| ||||||||||||    
T  24128 ggtggtagagatttaggtttcaatttgggaggaagtgagatt 24087  T

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