View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1429_high_9 (Length: 522)

Name: NF1429_high_9
Description: NF1429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1429_high_9
NF1429_high_9
[»] chr5 (10 HSPs)
chr5 (19-514)||(42777230-42777725)
chr5 (180-333)||(42835042-42835195)
chr5 (180-308)||(16487236-16487364)
chr5 (188-303)||(41228933-41229045)
chr5 (199-288)||(24654939-24655028)
chr5 (259-307)||(42406214-42406262)
chr5 (97-163)||(29417496-29417562)
chr5 (19-60)||(24654715-24654756)
chr5 (104-165)||(24654817-24654878)
chr5 (25-61)||(42841386-42841422)
[»] chr8 (1 HSPs)
chr8 (262-307)||(22944968-22945013)
[»] chr4 (1 HSPs)
chr4 (188-233)||(9687962-9688007)


Alignment Details
Target: chr5 (Bit Score: 468; Significance: 0; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 19 - 514
Target Start/End: Original strand, 42777230 - 42777725
Alignment:
Q  19 aaaggatcattctatttatgatgatacatctctcctcctacatnnnnnnnntacttgctccttttgctggttattggaaagaaagatttgagttatattc 118  Q
    |||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||    
T  42777230 aaaggatcattctatttatgatgatacatctctcctcctacataaaaaaaatacttgctccttttgctggttattggaaagaaagatttgagttatattc 42777329  T
Q  119 tgtttctggtgagaggtttggaaatagggccaaattagattggccaaggccgcttccaggttatgtttctggttttgatattttaggttctggtagtgtt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42777330 tgtttctggtgagaggtttggaaatagggccaaattagattggccaaggccgcttccaggttatgtttctggttttgatattttaggttctggtagtgtt 42777429  T
Q  219 catggaattctttgtctggtttgtgcatataaagaaaatattatattgtggaacccatctactaaagaattcaagctcattcctcccagctcttatagtt 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  42777430 catggaattctttgtctggtttgtgcatataaagaaaatattatattgtggaacccatctactaaagaattcaagctcattcctcccagcccttatagtt 42777529  T
Q  319 ctggaccttactgggaagcttaattgggctgatagggaagcgtttggttatgaccgtgtcaaagatgactataaattgttacgacatttaggattttctc 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42777530 ctggaccttactgggaagcttaattgggctgatagggaagcgtttggttatgaccgtgtcaaagatgactataaattgttacgacatttaggattttctc 42777629  T
Q  419 aaatgagtgattgtgatcttgatgtgcttccatgggaagatatatctttcgactccttaatatgggagatgatattttcgatattcgttctgtgct 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42777630 aaatgagtgattgtgatcttgatgtgcttccatgggaagatatatctttcgactccttaatatgggagatgatattttcgatattcgttctgtgct 42777725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 180 - 333
Target Start/End: Complemental strand, 42835195 - 42835042
Alignment:
Q  180 tatgtttctggttttgatattttaggttctggtagtgttcatggaattctttgtctggtttgtgcatataaagaaaatattatattgtggaacccatcta 279  Q
    |||| ||| |||||| ||||| | |||||||| ||||||||||||| | | ||| || | ||||||| | |||||||||||||||||||||| |||||||    
T  42835195 tatgattccggttttaatattattggttctggcagtgttcatggaactatctgtttgctatgtgcatctcaagaaaatattatattgtggaatccatcta 42835096  T
Q  280 ctaaagaattcaagctcattcctcccagctcttatagttctggaccttactggg 333  Q
     ||| ||||| |||||  ||||||||||| ||| |  ||||| |||||| ||||    
T  42835095 ataaggaatttaagctgcttcctcccagcccttttgattctgaaccttattggg 42835042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 180 - 308
Target Start/End: Complemental strand, 16487364 - 16487236
Alignment:
Q  180 tatgtttctggttttgatattttaggttctggtagtgttcatggaattctttgtctggtttgtgcatataaagaaaatattatattgtggaacccatcta 279  Q
    |||| |||||||||| |||| ||||| ||||| || |||| ||||| ||| |||||| |||||||||   | |  |||||| |||||||||| |||||||    
T  16487364 tatgattctggttttaatatattaggatctggcagcgttcttggaactctgtgtctgttttgtgcatcccatgtgaatattttattgtggaatccatcta 16487265  T
Q  280 ctaaagaattcaagctcattcctcccagc 308  Q
    |||  ||||| |||| |||||||||||||    
T  16487264 ctatggaatttaagcacattcctcccagc 16487236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 188 - 303
Target Start/End: Original strand, 41228933 - 41229045
Alignment:
Q  188 tggttttgatattttaggttctggtagtgttcatggaattctttgtctggtttgtgcatataaagaaaatattatattgtggaacccatctactaaagaa 287  Q
    |||||||||||||||| ||| ||||| ||||||||||| |||||  ||| ||| ||| | | | |  |||||| ||||||||||||||||||||| ||||    
T  41228933 tggttttgatattttaagttatggtaatgttcatggaactcttt--ctgttttatgcttctga-gttaatattgtattgtggaacccatctactatagaa 41229029  T
Q  288 ttcaagctcattcctc 303  Q
    || ||| |||||||||    
T  41229030 tttaaggtcattcctc 41229045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 199 - 288
Target Start/End: Original strand, 24654939 - 24655028
Alignment:
Q  199 ttttaggttctggtagtgttcatggaattctttgtctggtttgtgcatataaagaaaatattatattgtggaacccatctactaaagaat 288  Q
    |||||||||| |||||||| ||||||| ||||| | ||||||||||| | || |  ||| ||||||| ||||| ||||||||||| ||||    
T  24654939 ttttaggttcaggtagtgtccatggaactctttatatggtttgtgcacacaacgggaattttatattatggaatccatctactaaggaat 24655028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 259 - 307
Target Start/End: Original strand, 42406214 - 42406262
Alignment:
Q  259 ttatattgtggaacccatctactaaagaattcaagctcattcctcccag 307  Q
    ||||||||||||||||| |||| || ||||||||| |||||||||||||    
T  42406214 ttatattgtggaacccaactaccaatgaattcaaggtcattcctcccag 42406262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 97 - 163
Target Start/End: Complemental strand, 29417562 - 29417496
Alignment:
Q  97 aagaaagatttgagttatattctgtttctggtgagaggtttggaaatagggccaaattagattggcc 163  Q
    |||||| ||||||||| ||||||||||| |||  ||||||||  |||| || |||||||||||||||    
T  29417562 aagaaacatttgagttgtattctgtttccggttcgaggtttgagaataaggtcaaattagattggcc 29417496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 24654715 - 24654756
Alignment:
Q  19 aaaggatcattctatttatgatgatacatctctcctcctaca 60  Q
    |||||||||||||  |||||||||||| ||||||||||||||    
T  24654715 aaaggatcattcttattatgatgatacctctctcctcctaca 24654756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 165
Target Start/End: Original strand, 24654817 - 24654878
Alignment:
Q  104 atttgagttatattctgtttctggtgagaggtttggaaatagggccaaattagattggccaa 165  Q
    ||||||||| ||||||||||| |||  ||| |||| ||||| || |||||||||||||||||    
T  24654817 atttgagttgtattctgtttccggttcgagttttgaaaataaggtcaaattagattggccaa 24654878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 42841422 - 42841386
Alignment:
Q  25 tcattctatttatgatgatacatctctcctcctacat 61  Q
    ||||||| ||||||||||||||||| |||||||||||    
T  42841422 tcattctttttatgatgatacatctatcctcctacat 42841386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 307
Target Start/End: Original strand, 22944968 - 22945013
Alignment:
Q  262 tattgtggaacccatctactaaagaattcaagctcattcctcccag 307  Q
    |||||||||||||| ||||||  ||||||||| |||||||||||||    
T  22944968 tattgtggaacccaactactagggaattcaaggtcattcctcccag 22945013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 233
Target Start/End: Original strand, 9687962 - 9688007
Alignment:
Q  188 tggttttgatattttaggttctggtagtgttcatggaattctttgt 233  Q
    ||||||| ||||||||||||  |||||| |||||||||||||||||    
T  9687962 tggttttaatattttaggttaaggtagttttcatggaattctttgt 9688007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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