View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1429_low_1 (Length: 811)
Name: NF1429_low_1
Description: NF1429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1429_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 448 - 798
Target Start/End: Complemental strand, 10736834 - 10736484
Alignment:
| Q |
448 |
attgtttcttctatcatacttaataagcctttttggattcacctactcctctgctacccttccaatgcatttcctttttcatcttcttattattactacc |
547 |
Q |
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| T |
10736834 |
attgtttcttctatcatacctcataagcctttttgtattcaccaactcctctgctacccttccaatgcatttcctttttcatcttcttatcattattacc |
10736735 |
T |
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| Q |
548 |
attagccatgcaaagactcataatcttctcggcagcctcaccctcatctttactactttgcatcaacttctcaacatctgcctttggaagtctcattttc |
647 |
Q |
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| T |
10736734 |
attagccatgcaaagactcataatcttctcggcagcctcaccctcatctttactactttgcatcaacttctcaacatctgcctttggaagtctcattttc |
10736635 |
T |
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| Q |
648 |
aacctcacctcgccactcgtcaactcttcttttcccacctcgaagtcgttcattggtttcatagtcgtaaggtcagaagctgaccttcgagctaaagaca |
747 |
Q |
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| T |
10736634 |
aacctcaccccgccattcgtcaaatcttcttttcccacctcaaagtcgttcattggtttcataatcgtaaggtcagaagctgaccttcgagctaaagaca |
10736535 |
T |
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| Q |
748 |
gactctcgagtctgtctttagcactcatattaatcactgaacgaactcttc |
798 |
Q |
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| T |
10736534 |
gactctcgagtctgtctttagcactcatattaatcaccgaacgaacccttc |
10736484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 261 - 425
Target Start/End: Complemental strand, 10737021 - 10736862
Alignment:
| Q |
261 |
atcaaatgattcaacattaggttaaccgccctatgtgcttccaactatttatccataaataaacttgtatgaaaacgttatatattttatccttttaaac |
360 |
Q |
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| T |
10737021 |
atcaaatgattcaacattatgttaacttcc-tatgtgattccaactacttatccaaaaa----cttgtatgaaaacgttatatattttatcctttaaaac |
10736927 |
T |
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| Q |
361 |
actaaacgtgtttagtcttttcaaaaatggaagtaacttttggagattaaccgttctctttgctc |
425 |
Q |
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| T |
10736926 |
actaaacgtgtttagtctttttaaaaatggaaataacttttggagattaaccgttctctttgctc |
10736862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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