View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1429_low_11 (Length: 480)
Name: NF1429_low_11
Description: NF1429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1429_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 17 - 470
Target Start/End: Original strand, 42126151 - 42126604
Alignment:
| Q |
17 |
atataaagtaaaagagagatatagataaacacagtgtcacatgcgatgtttgtaacttcatgttcaaataacacaactgctatcatatggaatgatgttt |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42126151 |
atataaagtaaaagagagatatagataaacacagtgtcacatgcgatgtttgtaatttcatgttcaaataacacaactgctatcatatggaatgatgttt |
42126250 |
T |
|
| Q |
117 |
tgagcaataaagcatggattcttgcatctaattaccggaaaacaaatttaaaagttttgcatggtattggaatataaaatgttttgctgcttggaactaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
42126251 |
tgagcaataaagcatggattcttgcatctaattaccggaaaacaaatttaaaagttttgcatggtattggaatataaaatgttttggtgcttggaactaa |
42126350 |
T |
|
| Q |
217 |
cctctttaacattattaagctttgcagttttaagaacatgttggcctccttcaactttttgtagtggttgtatctcagctccttctttgataatacttcc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42126351 |
cctctttaacattattaagctttgcagttttaagaacatgttggcctccttcaactttttgtagtggttgtatctcagctccttctttgataatacttcc |
42126450 |
T |
|
| Q |
317 |
tttttgaataacatcataaggtccaatcgaagaatttcggccaatccttataggatggagactaagaattccattttttacctcatggctttgaaccaaa |
416 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42126451 |
tttttgaataacagcataaggtccaatcgaagaatttcggccaatccttataggatggagactaagaattccattttttacctcatggctttgaaccaaa |
42126550 |
T |
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| Q |
417 |
accccttcagagatgacagcttcatcaccaattgaaactagagacgggtctgtg |
470 |
Q |
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| T |
42126551 |
accccttcagagatgacagcttcatcaccaattgaaactagagacgggtctgtg |
42126604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 306 - 451
Target Start/End: Original strand, 24929735 - 24929880
Alignment:
| Q |
306 |
ataatacttcctttttgaataacatcataaggtccaatcgaagaatttcggccaatccttataggatggagactaagaattccattttttacctcatggc |
405 |
Q |
| |
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|||| |||||| ||||||| |||| ||||||||||||| |||||| | |||||| | || ||||||||||| ||||||||||| ||||||||||||| |
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| T |
24929735 |
ataacacttccgttttgaacaacagcataaggtccaatagaagaacattttccaatcttaatgggatggagacttagaattccattctttacctcatggc |
24929834 |
T |
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| Q |
406 |
tttgaaccaaaaccccttcagagatgacagcttcatcaccaattga |
451 |
Q |
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| T |
24929835 |
tttgaaccaaaacaccttctgcaacgacagcttcatctccgattga |
24929880 |
T |
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