View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1429_low_15 (Length: 452)
Name: NF1429_low_15
Description: NF1429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1429_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 376; Significance: 0; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 11 - 435
Target Start/End: Original strand, 8787652 - 8788076
Alignment:
| Q |
11 |
cacagattggtcaacctgggcagtgagtcactaggacaaaattcaagtgataagcaaaattcactattttctgatcccgcatttgaaaaaagcaatgaac |
110 |
Q |
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| T |
8787652 |
cacatattggtcaacctgggcagtgagtcactaggacaaaattcaagtgataagcaaaattcactattttctgatcccgcatttgaaaaaagcaatgaac |
8787751 |
T |
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| Q |
111 |
tattccttgatcctacatatgatcctcctggttatattagcgatgatgttggtgtagatgaaggtgatcacagatcggtcaatctgggtagtgagtcgct |
210 |
Q |
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| T |
8787752 |
tattccttgatcctacatatgatcctcctggttatattagtgatgatgttggtgtagatgaaggtgatcacagattggtcaatctgggtagtgagtcgct |
8787851 |
T |
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| Q |
211 |
aggacaaagttcacgttttaagcaaaattcactagtttctgatccggcatttgnnnnnnntaatgaactaatccttaattctgcgacgagtgttgatggt |
310 |
Q |
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| T |
8787852 |
aggacaaatttcatgttttaagcaaaattcactagtttctgatccggcatttgaaaaaaataatgaactaatccttaattctgcgacgattgttgatggt |
8787951 |
T |
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| Q |
311 |
gataaggagtatatgagttgtaagaataccacaaacacacccacggtggaggatgggggtaattgctccgatccagatgttactattttggaaccttatg |
410 |
Q |
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| T |
8787952 |
gataaggagtatatgagttgtaagaataccacaaacacacccacggtggaggatgggggtaattgctccgatccagatgttactattttggaaccttatc |
8788051 |
T |
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| Q |
411 |
aagtttgtgaagatacccctttcgt |
435 |
Q |
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| T |
8788052 |
aagtttgtgaagatacccctttcgt |
8788076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 122 - 263
Target Start/End: Original strand, 8787595 - 8787736
Alignment:
| Q |
122 |
cctacatatgatcctcctggttatattagcgatgatgttggtgtagatgaaggtgatcacagatcggtcaatctgggtagtgagtcgctaggacaaagtt |
221 |
Q |
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| T |
8787595 |
cctacatatgatcctcctggttatattagcgatgatgttggtgtagatgaagatgatcacatattggtcaacctgggcagtgagtcactaggacaaaatt |
8787694 |
T |
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| Q |
222 |
cacgttttaagcaaaattcactagtttctgatccggcatttg |
263 |
Q |
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|| || |||||||||||||||| |||||||||| ||||||| |
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| T |
8787695 |
caagtgataagcaaaattcactattttctgatcccgcatttg |
8787736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 301 - 435
Target Start/End: Original strand, 8782184 - 8782318
Alignment:
| Q |
301 |
tgttgatggtgataaggagtatatgagttgtaagaataccacaaacacacccacggtggaggatgggggtaattgctccgatccagatgttactattttg |
400 |
Q |
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|||||| |||||||||||||||||| | |||||| ||||||||||||| ||| ||||||||||||||||| | ||||||||||||||| ||||||||| |
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| T |
8782184 |
tgttgacggtgataaggagtatatgcatggtaagagtaccacaaacacatccaaggtggaggatgggggtattccctccgatccagatgtaactattttg |
8782283 |
T |
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| Q |
401 |
gaaccttatgaagtttgtgaagatacccctttcgt |
435 |
Q |
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| T |
8782284 |
aaatcttatccaatttgtgaagctaaccctttcgt |
8782318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 136 - 243
Target Start/End: Original strand, 8781938 - 8782045
Alignment:
| Q |
136 |
tcctggttatattagcgatgatgttggtgtagatgaaggtgatcacagatcggtcaatctgggtagtgagtcgctaggacaaagttcacgttttaagcaa |
235 |
Q |
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||||||| |||| |||||||||||||||||| |||||| ||||||||||| ||| ||||| ||||||||||| |||||| |||||||| || |||||| | |
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| T |
8781938 |
tcctggtcatatcagcgatgatgttggtgtaaatgaagatgatcacagattggttaatctaggtagtgagtcactaggaaaaagttcaagtgttaagcga |
8782037 |
T |
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| Q |
236 |
aattcact |
243 |
Q |
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|||||||| |
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| T |
8782038 |
aattcact |
8782045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 295 - 364
Target Start/End: Original strand, 8782055 - 8782124
Alignment:
| Q |
295 |
gacgagtgttgatggtgataaggagtatatgagttgtaagaataccacaaacacacccacggtggaggat |
364 |
Q |
| |
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||||| |||||||||||||||||||||||| || |||||||||||| ||||||| ||| |||||||||| |
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| T |
8782055 |
gacgattgttgatggtgataaggagtatatccgtggtaagaataccaaaaacacatccaaggtggaggat |
8782124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 273 - 435
Target Start/End: Original strand, 8776166 - 8776328
Alignment:
| Q |
273 |
atgaactaatccttaattctgcgacgagtgttgatggtgataaggagtatatgagttgtaagaataccacaaacacacccacggtggaggatgggggtaa |
372 |
Q |
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|||||| | |||||||||||| ||||| |||||||| |||||||||||| | || ||||||||||| |||||| ||| |||||||||| | ||| |
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| T |
8776166 |
atgaacaattccttaattctgtgacgattgttgatgacgataaggagtattttcgtgacaagaataccaccaacacatccaatgtggaggatgagaataa |
8776265 |
T |
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| Q |
373 |
ttgctccgatccagatgttactattttggaaccttatgaagtttgtgaagatacccctttcgt |
435 |
Q |
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|| ||| ||| ||||| | | ||||||||| ||||| | |||||||| | ||||||||||| |
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| T |
8776266 |
ttcctctgattcagatctgattattttggattcttatccaatttgtgaaaacacccctttcgt |
8776328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 8781981 - 8782045
Alignment:
| Q |
11 |
cacagattggtcaacctgggcagtgagtcactaggacaaaattcaagtgataagcaaaattcact |
75 |
Q |
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||||||||||| || || || ||||||||||||||| ||| |||||||| ||||| ||||||||| |
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| T |
8781981 |
cacagattggttaatctaggtagtgagtcactaggaaaaagttcaagtgttaagcgaaattcact |
8782045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 8782124 - 8782172
Alignment:
| Q |
199 |
tagtgagtcgctaggacaaagttcacgttttaagcaaaattcactagtt |
247 |
Q |
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| T |
8782124 |
tagtgagtcactaggacaaagttcaagtgttaagcgaaattcactagtt |
8782172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 8782125 - 8782169
Alignment:
| Q |
32 |
agtgagtcactaggacaaaattcaagtgataagcaaaattcacta |
76 |
Q |
| |
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||||||||||||||||||| |||||||| ||||| |||||||||| |
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| T |
8782125 |
agtgagtcactaggacaaagttcaagtgttaagcgaaattcacta |
8782169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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