View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1429_low_16 (Length: 439)
Name: NF1429_low_16
Description: NF1429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1429_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 21 - 426
Target Start/End: Complemental strand, 47713814 - 47713409
Alignment:
| Q |
21 |
taacaaaacttccatcgatcaaatggtaacaaatttcaacacccttcatacaaaccaaaacccaccaatgactttaacagaaaacatgtcaccaacatat |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
47713814 |
taacaaaacttccatcgatcaaatggtaacaaatttcaacacccttcatacaaaccaaaacccaccaatgactctaacagaaaacatgtcaccaacatat |
47713715 |
T |
|
| Q |
121 |
ctcactacttgcaacccatgtcttgacttcttcttccatgttgtccccgacannnnnnnngaaactctcctccgacgacttcaattagcatggtcctata |
220 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
47713714 |
ctcactactggcaacccatgtcttgacttcttcttccatgttgtccccgacactccccctgaaactctcctccgacgacttcaattagcatggtcctata |
47713615 |
T |
|
| Q |
221 |
acccactcaccacccttaaactcgtctgtaacctccgcggcgtccgcggtaccggcaagtccgatcgtgaaggtttctacgccgctgctctttggtttca |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47713614 |
acccactcaccacccttaaactcgtctgtaacctccgcggcgttcgcggtaccggcaagtccgatcgtgaaggtttctacgccgctgctctttggtttca |
47713515 |
T |
|
| Q |
321 |
ccactgccaccctaaaaccctagcttctaacgtcccttcccttgctgaatttggttacttcaaagatctcccagaaatcctttaccgtcttctgcaaggt |
420 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47713514 |
ccactaccaccctaaaaccctagcttctaacgtcccttcccttgctgactttggttacttcaaagatctcccagaaatcctttaccgtcttctgcaaggt |
47713415 |
T |
|
| Q |
421 |
accaat |
426 |
Q |
| |
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|||||| |
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| T |
47713414 |
accaat |
47713409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 76; Significance: 5e-35; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 206 - 413
Target Start/End: Complemental strand, 15835815 - 15835608
Alignment:
| Q |
206 |
tagcatggtcctataacccactcaccacccttaaactcgtctgtaacctccgcggcgtccgcggtaccggcaagtccgatcgtgaaggtttctacgccgc |
305 |
Q |
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||||||||||| ||||||||||||||||||| |||||||||||||||||||| || || || ||||||||||||||| || ||||| |||||||| || |
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| T |
15835815 |
tagcatggtcccataacccactcaccaccctcaaactcgtctgtaacctccgtggtgttcgtggtaccggcaagtccaataaagaaggcttctacgctgc |
15835716 |
T |
|
| Q |
306 |
tgctctttggtttcaccactgccaccctaaaaccctagcttctaacgtcccttcccttgctgaatttggttacttcaaagatctcccagaaatcctttac |
405 |
Q |
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|||||| ||||| || | |||||||||||||||||| | || || |||| | |||| ||||||||||||||||||||||| || ||||| ||| |
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| T |
15835715 |
tgctctctggttgcatgaaaatcaccctaaaaccctagctaccaatgtttcttcattcgctgcctttggttacttcaaagatctccctgagatcctctac |
15835616 |
T |
|
| Q |
406 |
cgtcttct |
413 |
Q |
| |
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|||||||| |
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| T |
15835615 |
cgtcttct |
15835608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 170
Target Start/End: Complemental strand, 15835918 - 15835851
Alignment:
| Q |
103 |
aacatgtcaccaacatatctcactacttgcaacccatgtcttgacttcttcttccatgttgtccccga |
170 |
Q |
| |
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||||||||||| |||| |||| | || | |||||||| ||||| ||||||||||||||||||||||| |
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| T |
15835918 |
aacatgtcaccgacatttctctccaccggtaacccatgccttgatttcttcttccatgttgtccccga |
15835851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 211 - 413
Target Start/End: Complemental strand, 19796572 - 19796370
Alignment:
| Q |
211 |
tggtcctataacccactcaccacccttaaactcgtctgtaacctccgcggcgtccgcggtaccggcaagtccgatcgtgaaggtttctacgccgctgctc |
310 |
Q |
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|||||| | ||||| |||||| |||| |||||||||||||||||||| ||||||||||||||||| |||||| | ||||| ||||||||||| |||| |
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| T |
19796572 |
tggtcccaaaaccctctcaccgccctcaaactcgtctgtaacctccgtggcgtccgcggtaccggaaagtccaacaaagaaggcttctacgccgccgctc |
19796473 |
T |
|
| Q |
311 |
tttggtttcaccactgccaccctaaaaccctagcttctaacgtcccttcccttgctgaatttggttacttcaaagatctcccagaaatcctttaccgtct |
410 |
Q |
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| T |
19796472 |
tctggtttcatgaaaatcaccctaaaaccctagctaccaatgttccttctctcgctgactttggctacttcaaagatctccctgagatcctctaccgtct |
19796373 |
T |
|
| Q |
411 |
tct |
413 |
Q |
| |
|
||| |
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|
| T |
19796372 |
tct |
19796370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 361 - 420
Target Start/End: Original strand, 19785180 - 19785239
Alignment:
| Q |
361 |
cttgctgaatttggttacttcaaagatctcccagaaatcctttaccgtcttctgcaaggt |
420 |
Q |
| |
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|||||||| ||||||||||||||||||||||| ||||| || |||||| |||| |||||| |
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| T |
19785180 |
cttgctgactttggttacttcaaagatctccctgaaattctataccgtattctccaaggt |
19785239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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