View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1429_low_22 (Length: 392)
Name: NF1429_low_22
Description: NF1429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1429_low_22 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-160; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 15 - 392
Target Start/End: Complemental strand, 32257434 - 32257059
Alignment:
| Q |
15 |
aatatagatcagtttgaatgtaatctatgtgataaataagcatataataatgatgcttaattgcaaaattatcagtttatgccggtgggagaaaatgcaa |
114 |
Q |
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|||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | || ||||||||||| |
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| T |
32257434 |
aataaagatcagtttaaatgtaatctatgtgataaataagcatataataatgatgcttaattgcaaaattctcagtttatgccagaggtagaaaatgcaa |
32257335 |
T |
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| Q |
115 |
caaaataaaagcataaccaagagtaaaaggcttatgagtatcaatcaacataaacactagtttcctcccnnnnnnnnttatagtaattttttgatcaagc |
214 |
Q |
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| T |
32257334 |
caaaataaaagcataaccaagagtaaaaggcttatgagtatcaatcaacataaccactaatttcctcccaaaaat--ttatagtaattttttgatcaagg |
32257237 |
T |
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| Q |
215 |
aaataaaataaagaatgactaatgaatcaagaaggatttgtttaatattgctcaatttaacataaaaagtgcacatggggaaaatatttggttaaatacc |
314 |
Q |
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| T |
32257236 |
aaataaaataaagagtcactaatgaatcaagaaggatttgtttaatattgcacaatttaacataaaaagtgcacatggggaaaatatttggttaaatacc |
32257137 |
T |
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| Q |
315 |
tcattcatttttctagaagaagaagagcttgtcgttcctttcttgcagatttaaaagtggaaattaggtttgactttc |
392 |
Q |
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| T |
32257136 |
taattaatttttctagaagaagaagagctcgtcgttcctttcttgcagatttaaaattggaaattaggtttgactttc |
32257059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 20 - 271
Target Start/End: Complemental strand, 32266246 - 32265989
Alignment:
| Q |
20 |
agatcagtttgaatgtaatctatgtgataaataagcatataataatgatgcttaattgcaaaattatcagtttatgccggtgggaga------------- |
106 |
Q |
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| T |
32266246 |
agatcaggttgaatgtaatctatgtgataaataagcatataataatgatgcttaattgcaaaattctcagtttatgccagagggagaatgtttctgatgc |
32266147 |
T |
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| Q |
107 |
aaatgcaacaaaataaaagcataaccaagagtaaaaggcttatgagtatcaatcaacataaacactagtttcctcccnnnnnnnnttatagtaatttttt |
206 |
Q |
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| T |
32266146 |
aaatgcaacaaaataaaaacataaccaagagtaaaatgcatatgagt----atcaacataaccactaattt-ctccc--aatttttttttgtaatttttt |
32266054 |
T |
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| Q |
207 |
gatcaagcaaataaaataaagaatgactaatgaatcaagaaggatttgtttaata-ttgctcaatt |
271 |
Q |
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| T |
32266053 |
gatcaaggaaataaaat-aagagtgtctaatgaatcaagaaggatttgtttgatatttgctcaatt |
32265989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 272 - 369
Target Start/End: Complemental strand, 33179117 - 33179021
Alignment:
| Q |
272 |
taacataaaaagtgcacatggggaaaatatttggttaaatacctcattcatttttctagaagaagaagagcttgtcgttcctttcttgcagatttaaa |
369 |
Q |
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| T |
33179117 |
taacataaaaagtgcacaggcggaaaa-atttaattaactaccttattcatttttctggaagaagaagagctcattgttcctttcttgcagatttaaa |
33179021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 29 - 107
Target Start/End: Complemental strand, 33179340 - 33179262
Alignment:
| Q |
29 |
tgaatgtaatctatgtgataaataagcatataataatgat-gcttaattgcaaaattatcagtttatgccggtgggagaa |
107 |
Q |
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| T |
33179340 |
tgaatgtaatctatgtgatagatat-catataataacgattggttaattgcaaacttctcagtttatgccagagggagaa |
33179262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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