View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1429_low_25 (Length: 359)
Name: NF1429_low_25
Description: NF1429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1429_low_25 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 202 - 359
Target Start/End: Original strand, 36733144 - 36733307
Alignment:
| Q |
202 |
tgaaaaaatttcaactattatctttttatcaccgattgcaatagc------acacgtttgtacctaactatagattacgtccacgtgccattacatgtgt |
295 |
Q |
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| T |
36733144 |
tgaaaaaatttcaactattatctttctatcaccgattgcaatagcagtagcacacgtttgtatctaactatagattacgtccacgtgccattacatgtgt |
36733243 |
T |
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| Q |
296 |
acaatatacattgaacccgacaaacagagctttcttcgcaaacacagacattcggtgacatttt |
359 |
Q |
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| T |
36733244 |
acaatatacattgaacccgacaaacagagcttttttcgcaaacacagacattcggtgacatttt |
36733307 |
T |
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Target: chr7; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 13 - 173
Target Start/End: Original strand, 36732914 - 36733076
Alignment:
| Q |
13 |
tcatcatactcagcgataagacaataatagaagtgcgattaac-----ttgcgaatttcaacctcaccacaaattcttaaaattttgttattttagaaat |
107 |
Q |
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| T |
36732914 |
tcatcatacttagcgataagacaata---gaagtgcgattaacgtaacttgcgaatttcaacctcaccacaaattcttgaaattttgttattttagaaat |
36733010 |
T |
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| Q |
108 |
ccttcctaatgagcttgatagtctttcctttaatgatatttttgaatttacatgcttaaaaatatt |
173 |
Q |
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| T |
36733011 |
ccctcctaatgagcttgatagtctttcttttaatgatatttttgaatttacatgcttaaaaatatt |
36733076 |
T |
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