View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1429_low_26 (Length: 356)
Name: NF1429_low_26
Description: NF1429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1429_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 17 - 339
Target Start/End: Original strand, 38222069 - 38222385
Alignment:
| Q |
17 |
ttataccaagaagttggtgcacatgaagattaagatgagcacaacaagtgagtggtagatttgaatgtttgaagtcgctgaacttttgtggggagtaggc |
116 |
Q |
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| T |
38222069 |
ttataccaagaagttggtgcacatgaagattaagatgagcacaacaagtgagtggtagatttgaatgtttgaagtcgctgaacttttgtggggagtaggc |
38222168 |
T |
|
| Q |
117 |
tgaggagctggtgcaagtgcaacatgttcattaacatcaattgcaaccttcactccacgctgacagaaacctcctccgcttatgaagtaatgggtctttg |
216 |
Q |
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| T |
38222169 |
tgaggagctggtgc------aacatgttcattaacatcgattgcgaccttcactccgcgctgacagaaacctcctccgcttatgaagtaatgggtcttgg |
38222262 |
T |
|
| Q |
217 |
cctcactcaactgaaaaacttctcttccaacacctgttgttatgttcttgatgaatccactatctatgcagttttcatagcttgtcttgttcacctccaa |
316 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38222263 |
cctcactcaactgaaaaacttctcttccgacacctgttgttatgttcttgatgaatccactatctatgcagttttcatagcttgtcttgttcacctccaa |
38222362 |
T |
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| Q |
317 |
cacactgaagaaatgcctatcat |
339 |
Q |
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||||||||||||||||||||||| |
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| T |
38222363 |
cacactgaagaaatgcctatcat |
38222385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 10 - 339
Target Start/End: Original strand, 38228427 - 38228750
Alignment:
| Q |
10 |
attattcttataccaagaagttggtgcacatgaagattaagatgagcacaacaagtgagtggtagatttgaatgtttgaagtcgctgaacttttgtgggg |
109 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38228427 |
attattattataccaagaagttggtgcacatgaagattaagatgagcacagcaagtgagtggtagatttgaatgtttgaagtcgctgaacttttgtgggg |
38228526 |
T |
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| Q |
110 |
agtaggctgaggagctggtgcaagtgcaacatgttcattaacatcaattgcaaccttcactccacgctgacagaaacctcctccgcttatgaagtaatgg |
209 |
Q |
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| T |
38228527 |
agtaggctgaggagctggtgc------aacatgttcattaacatcgattgcgaccttcactccgcgctgacagaaacctcctccgcttatgaagtaatgg |
38228620 |
T |
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| Q |
210 |
gtctttgcctcactcaactgaaaaacttctcttccaacacctgttgttatgttcttgatgaatccactatctatgcagttttcatagcttgtcttgttca |
309 |
Q |
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||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38228621 |
gtcttggcctcactcaactgaaaaacttctcttccgacacctgttgttatgttcttgatgaatccactatctatgcagttttcatagcttgtcttgttca |
38228720 |
T |
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| Q |
310 |
cctccaacacactgaagaaatgcctatcat |
339 |
Q |
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| T |
38228721 |
cctccaacacactgaagaaatgcctatcat |
38228750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 17 - 325
Target Start/End: Original strand, 38158731 - 38159030
Alignment:
| Q |
17 |
ttataccaagaagttggtgcacatgaagattaagatgagcacaacaagtgagtggtagatttgaatgtttgaagtcgctgaacttttgtggggagtaggc |
116 |
Q |
| |
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||||||||||| |||||||||||| |||||||||||||||||| ||| ||||| |||| ||||||||||| ||||| |||||||||||||||| |
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| T |
38158731 |
ttataccaagaggttggtgcacatcaagattaagatgagcacaga---tgaatggtaaatttaaatgtttgaagcatttgaacctttgtggggagtaggc |
38158827 |
T |
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| Q |
117 |
tgaggagctggtgcaagtgcaacatgttcattaacatcaattgcaaccttcactccacgctgacagaaacctcctccgcttatgaagtaatgggtctttg |
216 |
Q |
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|||||||||||||| |||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||| | |
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| T |
38158828 |
tgaggagctggtgc------aacatgttcattaacatcgattgcgaccttcactccgcgctgacagaaacctcctccgcttatgaagtaataggtcttgg |
38158921 |
T |
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| Q |
217 |
cctcactcaactgaaaaacttctcttccaacacctgttgttatgttcttgatgaatccactatctatgcagttttcatagcttgtcttgttcacctccaa |
316 |
Q |
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| T |
38158922 |
cctcagttagcagaaaaacatctcttccaccgccccttgttatgttcttgatgaaccctgtatctatgcagttttcatagcttgtcttgttcacctccaa |
38159021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 17 - 320
Target Start/End: Original strand, 38152397 - 38152697
Alignment:
| Q |
17 |
ttataccaagaagttggtgcacatgaagattaagatgagcacaacaagtgagtggtagatttgaatgtttgaagtcgctga---acttttgtggggagta |
113 |
Q |
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||||||||||| ||||||| || ||| |||||||||| || ||||||||||||||||||||||||||| ||| ||| || ||||||||||||| |
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| T |
38152397 |
ttataccaagagaatggtgcaaatcaaggttaagatgagtaccacaagtgagtggtagatttgaatgtttaaagcatctgtgccacctttgtggggagta |
38152496 |
T |
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| Q |
114 |
ggctgaggagctggtgcaagtgcaacatgttcattaacatcaattgcaaccttcactccacgctgacagaaacctcctccgcttatgaagtaatgggtct |
213 |
Q |
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|| |||||||||||||||| ||| |||||||||||||||||||||||||| ||||| | |||| ||||||||| ||||||||||||| | ||| |
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| T |
38152497 |
ggttgaggagctggtgcaa------catattcattaacatcaattgcaaccttcaatccactccaacagccacctcctccacttatgaagtaatagatct |
38152590 |
T |
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| Q |
214 |
ttgcctcactcaactgaaaaacttctcttccaacacctgttgttatgttcttgatgaatccactatctatgcagttttcatagcttgtcttgttcacctc |
313 |
Q |
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| | ||| ||| ||||||||| ||| || |||| ||| ||||||||| |||||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
38152591 |
tgtcttcagtcagctgaaaaacgtcttgtctgccaccccttgatatgttcttaatgaatcctgtatcgatgcagttttcatagcttgtcttgttcacctc |
38152690 |
T |
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| Q |
314 |
caacaca |
320 |
Q |
| |
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|| |||| |
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| T |
38152691 |
cagcaca |
38152697 |
T |
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