View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1429_low_30 (Length: 336)
Name: NF1429_low_30
Description: NF1429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1429_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 137; Significance: 2e-71; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 35242064 - 35242208
Alignment:
| Q |
1 |
ctaagaaccggttattaacattgaacatttagccatcatatataacctgactctgacccgaaggtcctggtatctgtggaatagattttatccataaatc |
100 |
Q |
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| T |
35242064 |
ctaagaaccagttattaacattgaacatttagccatcatatataacctgactctgaccggaaggtcctggtatctgtggaatagattttatccataaatc |
35242163 |
T |
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| Q |
101 |
gtacaacaatccatgtggttgtttatcaaattctgaaagcacagt |
145 |
Q |
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| T |
35242164 |
gtacaacaatccatgtggttgtttatcaaattctgaaagcacagt |
35242208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 227 - 327
Target Start/End: Original strand, 35242287 - 35242387
Alignment:
| Q |
227 |
tgtagaacaggagaaacttatgtatccttcacagaacaattacacacaagctaaattatccatattataagaaaaatgaatagtagtgcaaggagtataa |
326 |
Q |
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| T |
35242287 |
tgtagaacagtagaaacttatgtatccttcacagaacaattacacacaagctaaattatccatattataagaaaaatgaatagtagtgcaaggagtataa |
35242386 |
T |
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| Q |
327 |
t |
327 |
Q |
| |
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| |
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| T |
35242387 |
t |
35242387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 35272208 - 35272262
Alignment:
| Q |
3 |
aagaaccggttattaacattgaacatttagccatcatatataacctgactctgac |
57 |
Q |
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| T |
35272208 |
aagaaccagttattaacattgaacatttagccatcatatataacctgactctgac |
35272262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 103 - 145
Target Start/End: Original strand, 35247791 - 35247833
Alignment:
| Q |
103 |
acaacaatccatgtggttgtttatcaaattctgaaagcacagt |
145 |
Q |
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| T |
35247791 |
acaacaatccatgtggttgtttatcaaattctgaaagcacagt |
35247833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 91 - 145
Target Start/End: Original strand, 35254301 - 35254355
Alignment:
| Q |
91 |
tccataaatcgtacaacaatccatgtggttgtttatcaaattctgaaagcacagt |
145 |
Q |
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|||| ||||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
35254301 |
tccagaaatcatgcaacaatccatgtggttgtttatcaaattctgaaagcacagt |
35254355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 35247714 - 35247754
Alignment:
| Q |
14 |
attaacattgaacatttagccatcatatataacctgactct |
54 |
Q |
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| T |
35247714 |
attaacattgaacatttagccattatatataacctgactct |
35247754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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