View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1429_low_31 (Length: 333)
Name: NF1429_low_31
Description: NF1429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1429_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 16 - 322
Target Start/End: Original strand, 24984591 - 24984897
Alignment:
| Q |
16 |
agcaataacacttgcatatcatatattagcaacttctgcatttgattgagattttaagaaaggaaaatacttattttacactcaaattttgataaaatga |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24984591 |
agcaataacacttgcatatcatatattagcaacttctgcatttgattgagattttaagaaaggaaaatacttattttacactcaaattttgataaaatga |
24984690 |
T |
|
| Q |
116 |
cttattctcgtgcaatctaccttgccatttccattgttttgctttcctcagtagcaatggcagctgatcacgttgtgggtgatgaaaaaggttggaccgt |
215 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
24984691 |
cttattctcgtgcaatctaccttgccatttccatggttttgctttcctcagtagcaatggcagctgatcacgttgtgggtgatgaaaagggttggaccgt |
24984790 |
T |
|
| Q |
216 |
tgatttcaactacactcaatgggcccaagacaaagtttttcgtgttggtgacaaccttggtnnnnnnnnttgatttgcactaccattatttgcataatgt |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
24984791 |
tgatttcaactacactcaatgggcccaagacaaagtttttcgtgttggtgacaaccttggtaaaaaaaattgatttgcactaccattatttgcataatgt |
24984890 |
T |
|
| Q |
316 |
gcttcat |
322 |
Q |
| |
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||||||| |
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| T |
24984891 |
gcttcat |
24984897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 16 - 322
Target Start/End: Original strand, 24990421 - 24990727
Alignment:
| Q |
16 |
agcaataacacttgcatatcatatattagcaacttctgcatttgattgagattttaagaaaggaaaatacttattttacactcaaattttgataaaatga |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24990421 |
agcaataacacttgcatatcatatattagcaacttctgcatttgattgagattttaagaaaggaaaatacttattttacactcaaattttgataaaatga |
24990520 |
T |
|
| Q |
116 |
cttattctcgtgcaatctaccttgccatttccattgttttgctttcctcagtagcaatggcagctgatcacgttgtgggtgatgaaaaaggttggaccgt |
215 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
24990521 |
cttattctcgtgcaatctaccttgccatttccatggttttgctttcctcagtagcaatggcagctgatcacgttgtgggtgatgaaaagggttggaccgt |
24990620 |
T |
|
| Q |
216 |
tgatttcaactacactcaatgggcccaagacaaagtttttcgtgttggtgacaaccttggtnnnnnnnnttgatttgcactaccattatttgcataatgt |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
24990621 |
tgatttcaactacactcaatgggcccaagacaaagtttttcgtgttggtgacaaccttggtaaaaaaaattgatttgcactaccattatttgcataatgt |
24990720 |
T |
|
| Q |
316 |
gcttcat |
322 |
Q |
| |
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||||||| |
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| T |
24990721 |
gcttcat |
24990727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 135 - 270
Target Start/End: Complemental strand, 33424811 - 33424676
Alignment:
| Q |
135 |
ccttgccatttccattgttttgctttcctcagtagcaatggcagctgatcacgttgtgggtgatgaaaaaggttggaccgttgatttcaactacactcaa |
234 |
Q |
| |
|
|||| |||||||||| ||||| ||||| ||||| ||||| ||| |||||||| |||| |||||||| || ||||||||||||||||| | ||||||||| |
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| T |
33424811 |
cctttccatttccatggttttactttcatcagttgcaattgcaactgatcacattgttggtgatgacaagggttggaccgttgattttgattacactcaa |
33424712 |
T |
|
| Q |
235 |
tgggcccaagacaaagtttttcgtgttggtgacaac |
270 |
Q |
| |
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||||| |||||||||||||| |||||||| |||||| |
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| T |
33424711 |
tgggctcaagacaaagttttccgtgttggagacaac |
33424676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 142 - 269
Target Start/End: Complemental strand, 33410889 - 33410762
Alignment:
| Q |
142 |
atttccattgttttgctttcctcagtagcaatggcagctgatcacgttgtgggtgatgaaaaaggttggaccgttgatttcaactacactcaatgggccc |
241 |
Q |
| |
|
|||||||| ||||| ||||| ||||| ||||| ||| |||||||| |||| |||||||| || ||||||||||||||||| | |||||||| ||||| | |
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| T |
33410889 |
atttccatggttttactttcatcagttgcaattgcaactgatcacattgttggtgatgacaagggttggaccgttgattttgattacactcagtgggctc |
33410790 |
T |
|
| Q |
242 |
aagacaaagtttttcgtgttggtgacaa |
269 |
Q |
| |
|
|||||||||||||||||||||| ||||| |
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| T |
33410789 |
aagacaaagtttttcgtgttggagacaa |
33410762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 142 - 276
Target Start/End: Complemental strand, 33436903 - 33436769
Alignment:
| Q |
142 |
atttccattgttttgctttcctcagtagcaatggcagctgatcacgttgtgggtgatgaaaaaggttggaccgttgatttcaactacactcaatgggccc |
241 |
Q |
| |
|
||||| || ||||||||||| ||||| ||||||||||| |||||| |||| |||||||| || |||||||| |||||||| ||||| ||||| ||| | | |
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| T |
33436903 |
atttcaatggttttgctttcttcagttgcaatggcagccgatcacattgttggtgatgacaagggttggactgttgattttaactatactcagtggactc |
33436804 |
T |
|
| Q |
242 |
aagacaaagtttttcgtgttggtgacaaccttggt |
276 |
Q |
| |
|
| ||||| ||||| ||||||||||||||||||||| |
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| T |
33436803 |
aggacaaggttttccgtgttggtgacaaccttggt |
33436769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 95 - 272
Target Start/End: Complemental strand, 33416786 - 33416603
Alignment:
| Q |
95 |
actcaaattttgataaaatgacttattctcgtgcaatcta---ccttgccatttccattgttttgctttcctcagtagcaatggcagc---tgatcacgt |
188 |
Q |
| |
|
|||||||||||||| ||||| ||| |||||||| | | | |||| |||||||||| ||||| ||||| ||||| ||||| || || |||| | | |
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| T |
33416786 |
actcaaattttgatcaaatggcttcttctcgtgtagttttgatcctttccatttccatggttttactttcatcagttgcaattgctgcaactgattatat |
33416687 |
T |
|
| Q |
189 |
tgtgggtgatgaaaaaggttggaccgttgatttcaactacactcaatgggcccaagacaaagtttttcgtgttggtgacaacct |
272 |
Q |
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||| |||||||| || ||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
33416686 |
tgttggtgatgacaagggttggaccgttgattttgattacactcaatgggctcaagacaaagtttttcgtgttggagacaacct |
33416603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 188 - 276
Target Start/End: Original strand, 33427837 - 33427925
Alignment:
| Q |
188 |
ttgtgggtgatgaaaaaggttggaccgttgatttcaactacactcaatgggcccaagacaaagtttttcgtgttggtgacaaccttggt |
276 |
Q |
| |
|
||||||||||||| || || ||||| || | ||||| |||||||||||||| |||||||||||||||||||||||||||| |||||| |
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|
| T |
33427837 |
ttgtgggtgatgacaatggctggactattaacttcaattacactcaatgggcgtaagacaaagtttttcgtgttggtgacaatcttggt |
33427925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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