View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1429_low_34 (Length: 301)
Name: NF1429_low_34
Description: NF1429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1429_low_34 |
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| [»] chr4 (7 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 18 - 301
Target Start/End: Original strand, 35241674 - 35241958
Alignment:
| Q |
18 |
acagacaaaattgggaaatttatcgcattgattattcaccttcccgcttttcccacaacttgctagaatatttccatccgatgaaaaatcacaggacaat |
117 |
Q |
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| T |
35241674 |
acagacgaaattgggaaacttatcgcattaattattcaccttcccgcttttcccacaacttgctagaatatttccatccgatgaaaaatcacaggacaaa |
35241773 |
T |
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| Q |
118 |
agcttttgactacttgtaaaaccttggtgttagaaataaaaataaacattgaatcaactaaatttccatcattgtcatttcaaattgataactgaagcta |
217 |
Q |
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| T |
35241774 |
agcttttgactacttgtaaaaccttggtgttagaaataaaaataaacatcgaatcaactaaatttccatcattgtcatttcaaattgataactgaagcta |
35241873 |
T |
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| Q |
218 |
ctaacaagattttgtgaagtat-taaatgacagaattgtgatgccaaagatgcaaagaatagaaatttacttataaagtgttgaa |
301 |
Q |
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| T |
35241874 |
ctaacaagattttgtgaagtatataaatgacagaattgtgatgccaaagatgcaaagaatagaaatttacttataaagtgttgaa |
35241958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 26 - 288
Target Start/End: Original strand, 35278464 - 35278723
Alignment:
| Q |
26 |
aattgggaaatttatcgcattgattattcaccttcccgcttttcccacaacttgctagaatatttccatccgatgaaaaatcacaggacaatagcttttg |
125 |
Q |
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| T |
35278464 |
aattggaaaatttatcgcattgattattcaccttcccgctgttcccaccgcttgctacaatctttccatctgatgaaaaatcgcaggacgaaagtgtctg |
35278563 |
T |
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| Q |
126 |
actacttgtaaaaccttggtgttagaaataaaaataaacattgaatcaactaaatttccatcattgtcatttcaaattgataactgaagctactaac-aa |
224 |
Q |
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| T |
35278564 |
accgcttggaaaacctt-gtgtaagaaataaaaataaacagtgaatcaactaaatttccttatttgtcatctcaaat---tcact--agatactaacaaa |
35278657 |
T |
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| Q |
225 |
gattttgtgaag--tattaaatgacagaattgtgatgccaaagatgcaaagaatagaaatttactt |
288 |
Q |
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| T |
35278658 |
aaaattgtgaagtatatgaaatgacagaattgtgatgccaaagatgtatagaatagaaatttactt |
35278723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 68 - 195
Target Start/End: Original strand, 35253954 - 35254080
Alignment:
| Q |
68 |
tcccacaacttgctagaatatttccatccgatgaaaaatcacaggacaatagcttttgactacttgtaaaaccttggtgttagaaataaaaataaacatt |
167 |
Q |
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| T |
35253954 |
tcccaccacttgctacaatctttccatccgatgataaatcgcaggacaaaagactttgaccgcttgaaataccttg-tgttagaaataaaaataaacatt |
35254052 |
T |
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| Q |
168 |
gaatcaactaaatttccatcattgtcat |
195 |
Q |
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| T |
35254053 |
taatcaactaaatttccttaattgtcat |
35254080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 68 - 288
Target Start/End: Original strand, 35247356 - 35247582
Alignment:
| Q |
68 |
tcccacaacttgctagaatatttccatccgatgaaaaatcacaggacaatagcttttgactacttgtaaaaccttggtgttagaaataaaaataaacatt |
167 |
Q |
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| T |
35247356 |
tcccaccacttgctataatctttccatcagatgaaaaatcgcaggacataagcttctgattgcttagaaaacctt-gtgtaagaaataaaaataaacatt |
35247454 |
T |
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| Q |
168 |
gaatcaactaaatttccatcattgtcatttcaaattg----ataactg--aagctactaacaa-gattttgtgaag--tattaaatgacagaattgtgat |
258 |
Q |
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| T |
35247455 |
gaat-aacttaattt-cataactgaagttacgaattgcaatatagttggcaagatactaacaaggattttgtgaagtttatgaaatgacagaattgtgat |
35247552 |
T |
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| Q |
259 |
gccaaagatgcaaagaatagaaatttactt |
288 |
Q |
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| T |
35247553 |
gccaacgatgtaaagaatagaaacttactt |
35247582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 195
Target Start/End: Original strand, 35271830 - 35271954
Alignment:
| Q |
70 |
ccacaacttgctagaatatttccatccgatgaaaaatcacaggacaatagcttttgactacttgtaaaaccttggtgttagaaataaaaataaacattga |
169 |
Q |
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| T |
35271830 |
ccaccacttgcaacaatctttccatctgatgaaaaatcacaggacaaaagcttctgaccgctttgaaaacctt-gagtttaaaattagaatagacattga |
35271928 |
T |
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| Q |
170 |
atcaactaaatttccatcattgtcat |
195 |
Q |
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| T |
35271929 |
atcaattaaatgtccttaattgtcat |
35271954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 286
Target Start/End: Original strand, 35254120 - 35254165
Alignment:
| Q |
241 |
aaatgacagaattgtgatgccaaagatgcaaagaatagaaatttac |
286 |
Q |
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| T |
35254120 |
aaatgacagaattgtgatgccaacgatgtatagaatataaatttac |
35254165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 122
Target Start/End: Original strand, 35284032 - 35284085
Alignment:
| Q |
69 |
cccacaacttgctagaatatttccatccgatgaaaaatcacaggacaatagctt |
122 |
Q |
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| T |
35284032 |
cccaccacttgctacaatctttccatctgatgaaaaatcgcaggacaaaagctt |
35284085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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