View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1429_low_38 (Length: 275)
Name: NF1429_low_38
Description: NF1429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1429_low_38 |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 6241043 - 6241305
Alignment:
| Q |
1 |
cgcattttgtccatgagccagtccactttgcgctcggtattcacaaaaacaatgcaatgagtgatgaatttagtcgtatagatgtcatataatgtctcta |
100 |
Q |
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| T |
6241043 |
cgcattttgtccatgagccagtccactttgcgctcggtattcacaaaaacaatgcaatgagtgatgaatttagtcgtatagatgtcatataatgtctcta |
6241142 |
T |
|
| Q |
101 |
gcttccacttttcctcgtcaatgttgacataaaactgcttgataccctcaag---ggtcagctcatcacgctttgcctcaattgtcacaggctttttcat |
197 |
Q |
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| T |
6241143 |
gtttccacttttcctcgtcaacgttgacataaaactgcttgataccctcaagggtggtcagctcatcacgctttgcctgaattgtcacaggctttttcat |
6241242 |
T |
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| Q |
198 |
gaacttcctagtaatatcaagggcttcaggtggcattgtagaaaagattactccaacctgaat |
260 |
Q |
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| T |
6241243 |
gaacttcctagtaatctcaagggcttcaggtggcattgtagaagagattactccaacctgaat |
6241305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 91 - 260
Target Start/End: Original strand, 6249537 - 6249706
Alignment:
| Q |
91 |
aatgtctctagcttccacttttcctcgtcaatgttgacataaaactgcttgataccctcaagggtcagctcatcacgctttgcctcaattgtcacaggct |
190 |
Q |
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| T |
6249537 |
aatgtctcaagcttccattcttccttatcgacattgacataaaactgcttgataccttcaagggtcagctcgtcacgctttacgaggattctcactggct |
6249636 |
T |
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| Q |
191 |
ttttcatgaacttcctagtaatatcaagggcttcaggtggcattgtagaaaagattactccaacctgaat |
260 |
Q |
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| T |
6249637 |
tattcatgaacttcctagtaatctcaagggcttcaggtggcattgtagcagaaaatactccaacctgaat |
6249706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 6226701 - 6226765
Alignment:
| Q |
9 |
gtccatgagccagtccactttgcgctcggtattcacaaaaacaatgcaatgagtgatgaatttag |
73 |
Q |
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|||||||||||||||||||||| | |||||||||||| || || |||||||||||| |||||| |
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| T |
6226701 |
gtccatgagccagtccactttgtccatggtattcacaaagacgatacaatgagtgatggatttag |
6226765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 143
Target Start/End: Original strand, 6226786 - 6226847
Alignment:
| Q |
82 |
atgtcatataatgtctctagcttccacttttcctcgtcaatgttgacataaaactgcttgat |
143 |
Q |
| |
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| T |
6226786 |
atgtcacatagtgtctctagcttccactcttccttgtcaacatccacataaaactgcttgat |
6226847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 80 - 260
Target Start/End: Complemental strand, 17545332 - 17545152
Alignment:
| Q |
80 |
agatgtcatataatgtctctagcttccacttttcctcgtcaatgttgacataaaactgcttgataccctcaagggtcagctcatcacgctttgcctcaat |
179 |
Q |
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||||||| ||| ||||||||||||||||| ||||| |||| | |||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |
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| T |
17545332 |
agatgtcgcatagtgtctctagcttccactcttccttctcaacatcgacataaaactgcttgataccctcaagggtcagctcatcaggctttgcctgaat |
17545233 |
T |
|
| Q |
180 |
tgtcacaggctttttcatgaacttcctagtaatatcaagggcttcaggtggcattgtagaaaagattactccaacctgaat |
260 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
17545232 |
tgtcacaggctttttcatgaacttcctagtaatctcaagggcttcaggtggcattgtagcagagattactccaacctgaat |
17545152 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 91 - 260
Target Start/End: Complemental strand, 42718777 - 42718608
Alignment:
| Q |
91 |
aatgtctctagcttccacttttcctcgtcaatgttgacataaaactgcttgataccctcaagggtcagctcatcacgctttgcctcaattgtcacaggct |
190 |
Q |
| |
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||||||||||| ||||||| ||||| ||||| || || || ||||||||||||||||||||||||| |||||||||||| || |||| |||| |||| |
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| T |
42718777 |
aatgtctctagtttccactcttccttgtcaacattcacgtagaactgcttgataccctcaagggtcaattcatcacgctttaccagaattctcactggct |
42718678 |
T |
|
| Q |
191 |
ttttcatgaacttcctagtaatatcaagggcttcaggtggcattgtagaaaagattactccaacctgaat |
260 |
Q |
| |
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| |||||||||||||| || || || || || || || |||||||||| | ||| |||||||||||||| |
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| T |
42718677 |
tattcatgaacttccttgtgatctccagagcctctggaggcattgtagcagagaacactccaacctgaat |
42718608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 124 - 238
Target Start/End: Original strand, 17533680 - 17533794
Alignment:
| Q |
124 |
ttgacataaaactgcttgataccctcaagggtcagctcatcacgctttgcctcaattgtcacaggctttttcatgaacttcctagtaatatcaagggctt |
223 |
Q |
| |
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|||||||| ||||||||||||||||| | ||| |||||||||||||| | ||| ||||||| || |||||||||||||| || || ||||| || | |
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| T |
17533680 |
ttgacatagaactgcttgataccctccaaggtgagctcatcacgcttcacaagaatcctcacaggtttgttcatgaacttccttgtgatctcaagtgcct |
17533779 |
T |
|
| Q |
224 |
caggtggcattgtag |
238 |
Q |
| |
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|||| |||||||||| |
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| T |
17533780 |
caggaggcattgtag |
17533794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 170
Target Start/End: Complemental strand, 52329198 - 52329152
Alignment:
| Q |
124 |
ttgacataaaactgcttgataccctcaagggtcagctcatcacgctt |
170 |
Q |
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||||||||||||||||| |||||||| | ||| |||||||||||||| |
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| T |
52329198 |
ttgacataaaactgcttaataccctctaaggtgagctcatcacgctt |
52329152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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