View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1429_low_4 (Length: 657)
Name: NF1429_low_4
Description: NF1429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1429_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-147; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 371 - 651
Target Start/End: Original strand, 40403173 - 40403453
Alignment:
| Q |
371 |
gaacttgtcaccatccttgactttatgaagaccagaaaccaacttgtttggcctattttttacaaagtggaaccaacaaacataagacatctgaaaaata |
470 |
Q |
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| T |
40403173 |
gaacttgtcaccatccttgactttatgaagaccagaaaccaacttgtttggcctattttttacaaaatggaaccaacaaccataagacatctgaaaaata |
40403272 |
T |
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| Q |
471 |
gttacgaaaaagctatggatgaacatgaagaaaaatttggaaaggactctgagaagctgaaagcatggagatcagctttgtttgaagtcgcaaacttaaa |
570 |
Q |
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| T |
40403273 |
gttacgaaaaagctatggatgaacatgaagaaaaatttggaaaggactctgagaagctgaaagcatggagatcagctttgtttgaagtcgcaaacttaaa |
40403372 |
T |
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| Q |
571 |
aggactgcacttgaaatatgggtacatggtataattacaattatatttttggctaatttgtgtgactcacacctatgctac |
651 |
Q |
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| T |
40403373 |
aggacggcacttgaaatatgggtacatagtataattacaattatatttttggctaatttgtgtgactcacacctatgctac |
40403453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 453 - 557
Target Start/End: Original strand, 39619444 - 39619548
Alignment:
| Q |
453 |
taagacatctgaaaaatagttacgaaaaagctatggatgaacatgaagaaaaatttggaaaggactctgagaagctgaaagcatggagatcagctttgtt |
552 |
Q |
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| T |
39619444 |
taagacatcagaaaaatagttacgagaaagccatggttgatcatgaggttaagtttggaaaagactctgaaaatgtaaaagcatggataacagcattgtc |
39619543 |
T |
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| Q |
553 |
tgaag |
557 |
Q |
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| T |
39619544 |
tgaag |
39619548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 567
Target Start/End: Complemental strand, 40256826 - 40256675
Alignment:
| Q |
416 |
gtttggcctattttttacaaagtggaaccaacaaacataagacatctgaaaaatagttacgaaaaagctatggatgaacatgaagaaaaatttggaaagg |
515 |
Q |
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| T |
40256826 |
gtttggccaattttttacaaagtggagccatcagatgtaaggtatcagaagaatagttatggtaaagcaatgactgaacatgaaaataattttggaaatg |
40256727 |
T |
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| Q |
516 |
actctgagaagctgaaagcatggagatcagctttgtttgaagtcgcaaactt |
567 |
Q |
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| T |
40256726 |
attatgagaagatacaaaaatggagatcagctttgtttcaagttgccaactt |
40256675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 378
Target Start/End: Original strand, 40334112 - 40334177
Alignment:
| Q |
313 |
aagactttcgatcattgttctatctgaaaactatgcatattcctccttgtctcttgacgaacttgt |
378 |
Q |
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| T |
40334112 |
aagactttcgattattgttttgtctgaaaactatgcaaattccacatggtgtcttgatgaacttgt |
40334177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 378
Target Start/End: Original strand, 40387390 - 40387455
Alignment:
| Q |
313 |
aagactttcgatcattgttctatctgaaaactatgcatattcctccttgtctcttgacgaacttgt |
378 |
Q |
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| T |
40387390 |
aagactttcgattattgttttgtctgaaaactatgcaaattccacatggtgtcttgatgaacttgt |
40387455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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