View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1429_low_40 (Length: 274)

Name: NF1429_low_40
Description: NF1429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1429_low_40
NF1429_low_40
[»] chr4 (10 HSPs)
chr4 (138-258)||(48816162-48816282)
chr4 (13-100)||(48816320-48816407)
chr4 (13-94)||(48807763-48807844)
chr4 (155-254)||(15825385-15825484)
chr4 (152-254)||(48807588-48807690)
chr4 (157-254)||(48789846-48789943)
chr4 (13-71)||(15825579-15825637)
chr4 (7-71)||(48790048-48790112)
chr4 (23-71)||(48834101-48834149)
chr4 (155-254)||(48834277-48834376)


Alignment Details
Target: chr4 (Bit Score: 121; Significance: 5e-62; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 138 - 258
Target Start/End: Complemental strand, 48816282 - 48816162
Alignment:
Q  138 gtacatctactgacaggtcgaagaatctagaaccgaagtgaatttgattgtaagaacagtagtcaccgtgggaaactacgacaatgttttagattgggag 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48816282 gtacatctactgacaggtcgaagaatctagaaccgaagtgaatttgattgtaagaacagtagtcaccgtgggaaactacgacaatgttttagattgggag 48816183  T
Q  238 ttcaaagcaagtggttctatc 258  Q
    |||||||||||||||||||||    
T  48816182 ttcaaagcaagtggttctatc 48816162  T

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Target: chr4; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 13 - 100
Target Start/End: Complemental strand, 48816407 - 48816320
Alignment:
Q  13 aatatggtaatatcatgtggcgtcacactgaaactggcattcctaatgaattcgtaagagtttttcctgcaaccaactaatttaacta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48816407 aatatggtaatatcatgtggcgtcacactgaaactggcattcctaatgaattcgtaagagtttttcctgcaaccaactaatttaacta 48816320  T

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Target: chr4; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 13 - 94
Target Start/End: Complemental strand, 48807844 - 48807763
Alignment:
Q  13 aatatggtaatatcatgtggcgtcacactgaaactggcattcctaatgaattcgtaagagtttttcctgcaaccaactaatt 94  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  48807844 aatatggtaatatcatgtggcgtcacactgaaactgacattcctaatgaattcgtaagagtttttactgcaaccaactaatt 48807763  T

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Target: chr4; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 155 - 254
Target Start/End: Complemental strand, 15825484 - 15825385
Alignment:
Q  155 tcgaagaatctagaaccgaagtgaatttgattgtaagaacagtagtcaccgtgggaaactacgacaatgttttagattgggagttcaaagcaagtggttc 254  Q
    |||||||||| ||||||||||||||||||||||| ||||| |||||||| || |||||||| ||||||||||||||||||||||||||| ||||||||||    
T  15825484 tcgaagaatcaagaaccgaagtgaatttgattgttagaaccgtagtcactgttggaaactatgacaatgttttagattgggagttcaaaacaagtggttc 15825385  T

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Target: chr4; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 152 - 254
Target Start/End: Complemental strand, 48807690 - 48807588
Alignment:
Q  152 aggtcgaagaatctagaaccgaagtgaatttgattgtaagaacagtagtcaccgtgggaaactacgacaatgttttagattgggagttcaaagcaagtgg 251  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||||| || |||||| ||||||| |||||||||||| |||||||    
T  48807690 aggttgaagaatctagaaccgaagtgaatttgattgtaagaacagtagtcaccgcaggaaaatatgacaatattttagaatgggagttcaaaacaagtgg 48807591  T
Q  252 ttc 254  Q
    |||    
T  48807590 ttc 48807588  T

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Target: chr4; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 157 - 254
Target Start/End: Complemental strand, 48789943 - 48789846
Alignment:
Q  157 gaagaatctagaaccgaagtgaatttgattgtaagaacagtagtcaccgtgggaaactacgacaatgttttagattgggagttcaaagcaagtggttc 254  Q
    ||||| |||||||| ||||||||||||||||| ||||| |||||||| || |||||||| ||||||||||||||||||||||||||| ||||||||||    
T  48789943 gaagagtctagaactgaagtgaatttgattgttagaactgtagtcacggtaggaaactatgacaatgttttagattgggagttcaaaacaagtggttc 48789846  T

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Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 15825637 - 15825579
Alignment:
Q  13 aatatggtaatatcatgtggcgtcacactgaaactggcattcctaatgaattcgtaaga 71  Q
    ||||||||| ||| ||||||||||||||||||||| |||||||||||||||| ||||||    
T  15825637 aatatggtagtattatgtggcgtcacactgaaactagcattcctaatgaatttgtaaga 15825579  T

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Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 48790112 - 48790048
Alignment:
Q  7 tcgaagaatatggtaatatcatgtggcgtcacactgaaactggcattcctaatgaattcgtaaga 71  Q
    ||||| |||||| || ||| |||||||||||||||||||||||||||||| ||||||| ||||||    
T  48790112 tcgaacaatatgatagtattatgtggcgtcacactgaaactggcattcctgatgaatttgtaaga 48790048  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 48834101 - 48834149
Alignment:
Q  23 tatcatgtggcgtcacactgaaactggcattcctaatgaattcgtaaga 71  Q
    ||||||||||||||||| |||||| |||||| || ||||||||||||||    
T  48834101 tatcatgtggcgtcacattgaaaccggcatttctgatgaattcgtaaga 48834149  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 254
Target Start/End: Original strand, 48834277 - 48834376
Alignment:
Q  155 tcgaagaatctagaaccgaagtgaatttgattgtaagaacagtagtcaccgtgggaaactacgacaatgttttagattgggagttcaaagcaagtggttc 254  Q
    |||||||||| ||||||||||| || ||||| || || |  ||||| || || || ||||| |||||  |  ||||||||||||||||||||||||||||    
T  48834277 tcgaagaatcaagaaccgaagtaaacttgatagtgaggagtgtagttacagttggcaactatgacaacatcatagattgggagttcaaagcaagtggttc 48834376  T

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