View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1429_low_42 (Length: 267)
Name: NF1429_low_42
Description: NF1429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1429_low_42 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 18 - 257
Target Start/End: Original strand, 17475813 - 17476052
Alignment:
| Q |
18 |
acagaggagggtcaatagtcgagggagttgagctagcacagcattgtgaagctgccttcacccctgcccttgtgtttggcctagacatgcgttacaggct |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17475813 |
acagaggagggtcaatagtcgagggagttgagctagcacagcattgtgaagctgccttcacccctgcccttgtgtttggcctagacatgcgttacaggct |
17475912 |
T |
|
| Q |
118 |
caactgtttgttttggggcgtgggtgtgatagtcgtgcggtacatatatatcttgtaacactgtaaacagcaattcactcaagtaatatacggaactaca |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
17475913 |
caactgtttgttttggggcgtgggtgtgatagttgtgtggtacatatatatcttgtaacactgtaaaccgcaattcactcaagtaatatacggaactaca |
17476012 |
T |
|
| Q |
218 |
actgcgcagtaatcatagaggtcagcacatttggcctatg |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17476013 |
actgcgcagtaatcatagaggtcagcacatttggcctatg |
17476052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 209
Target Start/End: Complemental strand, 5948988 - 5948948
Alignment:
| Q |
169 |
cttgtaacactgtaaacagcaattcactcaagtaatatacg |
209 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
5948988 |
cttgtaacactgtaaacactaattcactcaagtaatatacg |
5948948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 38970092 - 38970140
Alignment:
| Q |
169 |
cttgtaacactgtaaacagcaattcactcaagtaatatacggaactaca |
217 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
38970092 |
cttgtaacactgtaaaccctaattcactcaagtaatatatggaactaca |
38970140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 170 - 215
Target Start/End: Original strand, 28820750 - 28820795
Alignment:
| Q |
170 |
ttgtaacactgtaaacagcaattcactcaagtaatatacggaacta |
215 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
28820750 |
ttgtaacactgtaaactctaattcactcaagtaatatatggaacta |
28820795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 222
Target Start/End: Original strand, 32155541 - 32155574
Alignment:
| Q |
189 |
aattcactcaagtaatatacggaactacaactgc |
222 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |
|
|
| T |
32155541 |
aattcactcaagtaatatacggaactataactgc |
32155574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University