View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1429_low_44 (Length: 256)
Name: NF1429_low_44
Description: NF1429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1429_low_44 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 4814976 - 4814721
Alignment:
| Q |
1 |
ttgtttttaggggatttgatcccttggatgcttggtgagctgaagtctataggtaattgaatttagtttttgtggtcattcaggaggaagtgtgggttac |
100 |
Q |
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| T |
4814976 |
ttgtttttaggggatttgatcccttggatgatcaggtaattgaagtcgataggtaattgaatttagtttctgtggtcattcaggaggaagtgtgggttac |
4814877 |
T |
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| Q |
101 |
gctttgattcaggtgttaactttgattttggtggttaattttcttattggtgttggtgatagtacttggttcggtagtgttcgtattagtgcttttgtgg |
200 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| | |
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| T |
4814876 |
gctttgattcaggtgttaactttggttttggtggttaattttcttattggtgttggtgatagtacttggttgggtagtgttcgtatcagtgcttttgtag |
4814777 |
T |
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| Q |
201 |
gtttttcttttaggtgttccattatatacgacacctttgctttgtaatttttgtat |
256 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
4814776 |
gtttctcttttaggtgttccattatatacgacacctttgctttgtagtttttgtat |
4814721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 4782545 - 4782290
Alignment:
| Q |
1 |
ttgtttttaggggatttgatcccttggatgcttggtgagctgaagtctataggtaattgaatttagtttttgtggtcattcaggaggaagtgtgggttac |
100 |
Q |
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|||||||||||||||||||||||||||||| | | | ||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
4782545 |
ttgtttttaggggatttgatcccttggatgatcaggtaattgaagtcgataggaaattgaatttagtttctgtggtcattcaggaggaagtgtgggttac |
4782446 |
T |
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| Q |
101 |
gctttgattcaggtgttaactttgattttggtggttaattttcttattggtgttggtgatagtacttggttcggtagtgttcgtattagtgcttttgtgg |
200 |
Q |
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| T |
4782445 |
gctttgattcaggtgttaactttggttttggtggttaattttcttattggtgttggtgatagtacttggttaggtagtgttcgtataagtgcttttgtag |
4782346 |
T |
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| Q |
201 |
gtttttcttttaggtgttccattatatacgacacctttgctttgtaatttttgtat |
256 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
4782345 |
gtttctcttttaggtgttccattatatacgacacctttgctttgtagtttttgtat |
4782290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 152
Target Start/End: Complemental strand, 36132544 - 36132446
Alignment:
| Q |
57 |
ttgaatttagtttttgtggtcattcaggaggaagtgt--gggttacg-ctttgattcaggtgttaactttgattttggtggttaattttcttattggtg |
152 |
Q |
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|||| ||| ||||||||||||||||| |||||||||| |||||||| |||||||| | ||||| ||||||||||||| || |||||||||||||| |
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| T |
36132544 |
ttgatttttgtttttgtggtcattcatgaggaagtgttggggttacgtctttgatttaagtgttggctttgattttggtaatttgttttcttattggtg |
36132446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 155
Target Start/End: Complemental strand, 18786973 - 18786921
Alignment:
| Q |
103 |
tttgattcaggtgttaactttgattttggtggttaattttcttattggtgttg |
155 |
Q |
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||||||| ||||||| |||||||||| |||||||| |||| |||||||||||| |
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| T |
18786973 |
tttgatttaggtgttgactttgatttcggtggttattttttttattggtgttg |
18786921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 57 - 158
Target Start/End: Complemental strand, 17427724 - 17427621
Alignment:
| Q |
57 |
ttgaatttagtttttgtggtcattcaggaggaagtgtgggttac-gctttgattcaggtgttaactttgatttt-ggtggttaattttcttattggtgtt |
154 |
Q |
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|||||||| |||| ||| ||||||| ||||||||||||| | | ||||| | | ||||| ||||||||||| |||||||| |||||||||||||||| |
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| T |
17427724 |
ttgaattttgtttatgttgtcattcgcgaggaagtgtggggtcttgatttgacttaagtgttgactttgatttttggtggttatttttcttattggtgtt |
17427625 |
T |
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| Q |
155 |
ggtg |
158 |
Q |
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|||| |
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| T |
17427624 |
ggtg |
17427621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 158
Target Start/End: Complemental strand, 21322012 - 21321923
Alignment:
| Q |
71 |
tgtggtcattcaggaggaagtgtgggttacg--ctttgattcaggtgttaactttgattttggtggttaattttcttattggtgttggtg |
158 |
Q |
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| T |
21322012 |
tgtggtcattcatgaggaagtgtgggcgattgactttgatttaaatgttaactttggttttggtagtcagttttcttattggtgttggtg |
21321923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 158
Target Start/End: Complemental strand, 31122733 - 31122676
Alignment:
| Q |
102 |
ctttgattcaggtgttaactttgattttggtggttaatttt-cttattggtgttggtg |
158 |
Q |
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|||||||| ||||||| |||||| |||| ||||||| |||| |||||||||||||||| |
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| T |
31122733 |
ctttgatttaggtgttgactttggttttagtggttagttttacttattggtgttggtg |
31122676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 157
Target Start/End: Complemental strand, 15676609 - 15676553
Alignment:
| Q |
101 |
gctttgattcaggtgttaactttgattttggtggttaattttcttattggtgttggt |
157 |
Q |
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|||||| || ||||||| |||||| ||||| |||||| |||||||||||||||||| |
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| T |
15676609 |
gctttggtttaggtgttgactttggttttgctggttagatttcttattggtgttggt |
15676553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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