View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1429_low_5 (Length: 651)
Name: NF1429_low_5
Description: NF1429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1429_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 593; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 593; E-Value: 0
Query Start/End: Original strand, 18 - 633
Target Start/End: Complemental strand, 35080054 - 35079438
Alignment:
| Q |
18 |
gaacaaagagtattaatggctggtggatttgcttgactcgatttacgcaaaaaactgtctttactctttagtattcttttgttaaaaagaacggttttaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35080054 |
gaacaaagagtattaatggctggtggatttgcttgactcgatttacgcaaaaaactgtctttactctttagtattcttttgttaaaaagaacggttttaa |
35079955 |
T |
|
| Q |
118 |
aaccgtcatttttgagat-acatgtaaaatttgcctataaattaagaaccataaagtaagttctatagttcattataattaacaaaagtgaaatggcacc |
216 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
35079954 |
aaccgtcatttttgagatgacatgtaaaatttgcctataaattaagaaccataaagtaagttctatagttcattataattaacaaaagagaaatggcacc |
35079855 |
T |
|
| Q |
217 |
ttcagcttgtttatccgttttgctcgctatttcaatgatctttatttcccatgccatttcactaccaacaccaagccccaagttgtacaaaagtgtatgt |
316 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35079854 |
ttcagcttgtttatccgttttgctcgttatttcaatgatctttatttcccatgccatttcactaccaacaccaagccccaagttgtacaaaagtgtatgt |
35079755 |
T |
|
| Q |
317 |
aaagaacctcgtcagaaagaattcgaacaacgttgtctcaaacttatagaagcttaccctaaaattaccttgatcaaagattatctaaccttttgcaggt |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35079754 |
aaagaacctcgtcagaaagaattcgaacaacgttgtctcaaacttatagaagcttaccctaaaattaccttgatcaaagattatctaaccttttgcaggt |
35079655 |
T |
|
| Q |
417 |
cctttttaaagattgtggcaataaagaaggcaataaaatcccaacatcgagtcaaagaaattgtgaaaaaatatccttcttctcaacctatcaaagaatg |
516 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35079654 |
cctttttaaagactgtggcaataaagaaggcaataaaatcccaacatcgagtcaaagaaattgtgaaaaaatatccttcttctcaacctatcaaagaatg |
35079555 |
T |
|
| Q |
517 |
cggtgatgattacaatacggtggttagcgaggtacaaggtgcattgcgcgaggatccggaaacgataagcttggctgtcaaatatgctagcgatgcactt |
616 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35079554 |
cggtgatgattacaatacggtggttagcgaggtacaaggtgcattgcgcgaggatccggaaatgataagcttggctgtcaaatatgctagcgatgcactt |
35079455 |
T |
|
| Q |
617 |
gacatgtgtgaacgtag |
633 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
35079454 |
gacatgtgtgaacgtag |
35079438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 188 - 633
Target Start/End: Complemental strand, 35074911 - 35074469
Alignment:
| Q |
188 |
attataattaacaaaagtgaaatggcaccttcagcttgtttatccgttttgctcgctatttcaatgatctttatttcccatgccatttcactaccaacac |
287 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| | | |||||| |||| || |||||||||||||||||||| |||||| |||||| |||||| |
|
|
| T |
35074911 |
attataattaacaaaatagaaatggcaccttcaacatacttatccttttttatcattatttcaatgatctttatttgtcatgccctttcac---caacac |
35074815 |
T |
|
| Q |
288 |
caagccccaagttgtacaaaagtgtatgtaaagaacctcgtcagaaagaattcgaacaacgttgtctcaaacttatagaagcttaccctaaaattacctt |
387 |
Q |
| |
|
||||||| ||||||||| || || |||| |||||| || |||| ||||| || |||||||||||||||||||||||||||||||||||| ||||||| || |
|
|
| T |
35074814 |
caagccctaagttgtacgaacgtatatgcaaagaatctggtcaaaaagactttgaacaacgttgtctcaaacttatagaagcttaccctcaaattacttt |
35074715 |
T |
|
| Q |
388 |
gatcaaagattatctaaccttttgcaggtcctttttaaagattgtggcaataaagaaggcaataaaatcccaacatcgagtcaaagaaattgtgaaaaaa |
487 |
Q |
| |
|
|||| ||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||| | ||| ||||| ||| |||| ||| |
|
|
| T |
35074714 |
gatcgaagattatctaactttttgcaggtcatttttaaagattgtggcaatagagaaggcagtaaaatcccaacaacaagttaaagagattatgaacaaa |
35074615 |
T |
|
| Q |
488 |
tatccttcttctcaacctatcaaagaatgcggtgatgattacaatacggtggttagcgaggtacaaggtgcattgcgcgaggatccggaaacgataagct |
587 |
Q |
| |
|
||||||||||||||||| ||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
35074614 |
tatccttcttctcaacccatcaaagaatgtggggatgattacaatacggtggttatcgaggtacaaggtgcattgcgtgaggatccggaaatgataagca |
35074515 |
T |
|
| Q |
588 |
tggctgtcaaatatgctagcgatgcacttgacatgtgtgaacgtag |
633 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
35074514 |
tggctgtcaattatgctagcgatgcacttgacatgtgtgaacgtag |
35074469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 173; Significance: 1e-92; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 207 - 533
Target Start/End: Complemental strand, 23915179 - 23914856
Alignment:
| Q |
207 |
aaatggcaccttcagcttgtttatccgttttgctcgctatttcaatgatctttatttcccatgccatttcactaccaacaccaagccccaagttgtacaa |
306 |
Q |
| |
|
|||||||| ||||| | | ||||||| |||||||| | |||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||| | |
|
|
| T |
23915179 |
aaatggcatcttcaacctatttatccattttgctcaccatttcaatgatctttatttcccatgccaattcac---caacaccaagcctcaagttgtacca |
23915083 |
T |
|
| Q |
307 |
aagtgtatgtaaagaacctcgtcagaaagaattcgaacaacgttgtctcaaacttatagaagcttaccctaaaattaccttgatcaaagattatctaacc |
406 |
Q |
| |
|
|| |||||| ||| ||||| |||||||||| ||||||||||| ||||||||||| ||||||| ||||||| |||||| ||||||||||||||||| ||| |
|
|
| T |
23915082 |
aaatgtatgcaaacaacctggtcagaaagacttcgaacaacgctgtctcaaactaatagaaggttaccctccaattactttgatcaaagattatcttacc |
23914983 |
T |
|
| Q |
407 |
ttttgcaggtcctttttaaagattgtggcaataaagaaggcaataaaatcccaacatcgagtcaaagaaattgtgaaaaaatatccttcttctcaaccta |
506 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||| | ||| ||||||||| ||||||||||||||||||||||||| | |
|
|
| T |
23914982 |
ttttgcaggtcatttttaaagattgcggcaatagggaaggcaataaaatcccaacaacaagttaaagaaattatgaaaaaatatccttcttctcaaccca |
23914883 |
T |
|
| Q |
507 |
tcaaagaatgcggtgatgattacaata |
533 |
Q |
| |
|
|||||||||| | | ||||||| |||| |
|
|
| T |
23914882 |
tcaaagaatgtgctaatgattataata |
23914856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 178 - 533
Target Start/End: Complemental strand, 23922858 - 23922493
Alignment:
| Q |
178 |
tctatagttcattataattaacaaaagtgaaa-tggcaccttcagcttgtttatccgttttgctcgctatttcaatgatctttatttcccatgccatttc |
276 |
Q |
| |
|
||||| || |||||||||||||||||| |||| ||||| ||||||| | ||||||| |||||||| | ||||||||||||||| |||| ||||||||||| |
|
|
| T |
23922858 |
tctattgtccattataattaacaaaagagaaaatggcatcttcagcctatttatccattttgctcaccatttcaatgatctttgtttctcatgccatttc |
23922759 |
T |
|
| Q |
277 |
acta---------ccaacaccaagccccaagttgtacaaaagtgtatgtaaagaacctcgtcagaaagaattcgaacaacgttgtctcaaacttatagaa |
367 |
Q |
| |
|
|| | ||| |||||||||||||||||||| ||| |||||| |||| |||| |||| ||||| || |||||||||||| | |||||||||||| |
|
|
| T |
23922758 |
accaacaccaacaccagcaccaagccccaagttgtaccaaaatgtatgcaaagcacctggtcaaaaagactttgaacaacgttgtttgaaacttatagaa |
23922659 |
T |
|
| Q |
368 |
gcttaccctaaaattaccttgatcaaagattatctaaccttttgcaggtcctttttaaagattgtggcaataaagaaggcaataaaatcccaacatcgag |
467 |
Q |
| |
|
|||||||| |||||||| ||||| |||||||||| |||||| |||||| |||||||||| || |||||||||||||||| ||||||||||||| | || |
|
|
| T |
23922658 |
gcttaccccaaaattactttgattgaagattatcttacctttgtcaggtcatttttaaagaatgcggcaataaagaaggcagtaaaatcccaacaacaag |
23922559 |
T |
|
| Q |
468 |
tcaaagaaattgtgaaaaaatatccttcttctcaacctatcaaagaatgcggtgatgattacaata |
533 |
Q |
| |
|
| ||||||||| ||||||||||||||||||||||||| ||||||||||| | ||||||||| |||| |
|
|
| T |
23922558 |
ttaaagaaattatgaaaaaatatccttcttctcaaccaatcaaagaatgtgttgatgattataata |
23922493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 285 - 633
Target Start/End: Complemental strand, 25803163 - 25802815
Alignment:
| Q |
285 |
caccaagccccaagttgtacaaaagtgtatgtaaagaacctcgtcagaaagaattcgaacaacgttgtctcaaacttatagaagcttaccctaaaattac |
384 |
Q |
| |
|
|||||||||| ||||||||| ||| |||||||||||||| | || ||||| |||||||||||||| || || || |||||| |||||||| |||| || |
|
|
| T |
25803163 |
caccaagccctaagttgtaccaaaacgtatgtaaagaacccggccaaaaagacttcgaacaacgttgcctgaagctaatagaatcttaccctcaaatcac |
25803064 |
T |
|
| Q |
385 |
cttgatcaaagattatctaaccttttgcaggtcctttttaaagattgtggcaataaagaaggcaataaaatcccaacatcgagtcaaagaaattgtgaaa |
484 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||| ||||| ||||||| || |
|
|
| T |
25803063 |
tttgatcgaagattatctaaccttttgcaggtcatttttaaagattgtggcaatagacaaggcaataaaatcccaacaagtagtcagagaaattactgaa |
25802964 |
T |
|
| Q |
485 |
aaatatccttcttctcaacctatcaaagaatgcggtgatgattacaatacggtggttagcgaggtacaaggtgcattgcgcgaggatccggaaacgataa |
584 |
Q |
| |
|
||||||||||||||| | || |||| ||| || ||||||||||| ||| |||||| |||||| |||| |||||| |||||||||||| |||| |
|
|
| T |
25802963 |
aaatatccttcttctgatcccatcagagagtgttttgatgattacagtaccgtggttgttgaggtaaaaggagcattggctgaggatccggaattgatag |
25802864 |
T |
|
| Q |
585 |
gcttggctgtcaaatatgctagcgatgcacttgacatgtgtgaacgtag |
633 |
Q |
| |
|
| |||||||||||||||||| | |||||| | |||||||| |||||||| |
|
|
| T |
25802863 |
ggttggctgtcaaatatgctggtgatgcagtcgacatgtgcgaacgtag |
25802815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 248 - 512
Target Start/End: Complemental strand, 24436275 - 24436008
Alignment:
| Q |
248 |
tcaatgatctttatttcccatgccatttcactaccaacaccaagccccaagttgtacaaaagtgtatgtaaagaacctcgtcagaaag------aattcg |
341 |
Q |
| |
|
||||||||||||||||| || |||||||||| ||||| ||||||| || ||||| |||||||||||||||||| || | | ||| | | | |
|
|
| T |
24436275 |
tcaatgatctttatttctcacgccatttcac---caacatcaagccctaacttgtataaaagtgtatgtaaagaaactaataaacaagacccccactatg |
24436179 |
T |
|
| Q |
342 |
aacaacgttgtctcaaacttatagaagcttaccctaaaattaccttgatcaaagattatctaaccttttgcaggtcctttttaaagattgtggcaataaa |
441 |
Q |
| |
|
|||||| ||| || |||||| ||||| | ||||| ||||||| | ||||||||||||||| |||| || | ||||||| ||||||||||||| | |
|
|
| T |
24436178 |
aacaaccttgcctgaaacttttagaaccctacccacaaattacttctgccaaagattatctaactttttcaagattatttttaaggattgtggcaataga |
24436079 |
T |
|
| Q |
442 |
gaaggcaataaaatcccaacatcgagtcaaagaaattgtgaaaaaatatccttcttctcaacctatcaaag |
512 |
Q |
| |
|
||| |||| |||| ||||||||| |||||||||||| |||||| ||||||||||||||| | ||||||| |
|
|
| T |
24436078 |
gaatgcaacaaaagcccaacatcaagtcaaagaaatgaagaaaaagtatccttcttctcaaaccatcaaag |
24436008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 288 - 499
Target Start/End: Original strand, 23995237 - 23995448
Alignment:
| Q |
288 |
caagccccaagttgtacaaaagtgtatgtaaagaacctcgtcagaaagaattcgaacaacgttgtctcaaacttatagaagcttaccctaaaattacctt |
387 |
Q |
| |
|
||||||| ||||||||| ||||||||||||| ||| |||| || ||||| || |||||||| || | ||| ||||||| |||||| ||||||| | |
|
|
| T |
23995237 |
caagccctaagttgtaccaaagtgtatgtaaggaatctcgccacaaagattttgaacaacgctgcttgaaaacattagaagcctaccctcaaattacttc |
23995336 |
T |
|
| Q |
388 |
gatcaaagattatctaaccttttgcaggtcctttttaaagattgtggcaataaagaaggcaataaaatcccaacatcgagtcaaagaaattgtgaaaaaa |
487 |
Q |
| |
|
|| | |||||||||| || |||| ||| | | | |||||||||||||||||||||| ||| |||| | ||||||| |||||||||||| ||| ||| |
|
|
| T |
23995337 |
gaccgaagattatcttacattttccagattatatctaaagattgtggcaataaagaatgcaggaaaagctcaacatcaagtcaaagaaatgaagaacaaa |
23995436 |
T |
|
| Q |
488 |
tatccttcttct |
499 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
23995437 |
tacccttcttct |
23995448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 278
Target Start/End: Complemental strand, 25803278 - 25803209
Alignment:
| Q |
209 |
atggcaccttcagcttgtttatccgttttgctcgctatttcaatgatctttatttcccatgccatttcac |
278 |
Q |
| |
|
|||||||||||| | | |||||| |||||||| | ||||||||||| |||||||| ||||| ||||||| |
|
|
| T |
25803278 |
atggcaccttcaacatatttatcatttttgctcaccatttcaatgatgtttatttctcatgctatttcac |
25803209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 226 - 517
Target Start/End: Original strand, 13435801 - 13436089
Alignment:
| Q |
226 |
tttatccgttttgctcgctatttcaatgatctttatttcccatgccatttcactaccaacaccaagccccaagttgtacaaaagtgtatgtaaagaacct |
325 |
Q |
| |
|
||||||| | |||||| | || ||||||||||||||||| || |||||||||| | ||| ||||||| || |||||||||||||||||||||||| | |
|
|
| T |
13435801 |
tttatccttattgctcaccatatcaatgatctttatttctcacgccatttcacga---acatcaagccctaatttgtacaaaagtgtatgtaaagaaatt |
13435897 |
T |
|
| Q |
326 |
cgtcagaaagaattcgaacaacgttgtctcaaacttatagaagcttaccctaaaattaccttgatcaaagattatctaaccttttgcaggtcctttttaa |
425 |
Q |
| |
|
|| || || | ||||||| ||| | |||||| ||||| | ||||| ||||||| | || ||||||||| ||||||| || | ||||||| |
|
|
| T |
13435898 |
ggtaaggaaccctatgaacaaccttgcttgaaacttttagaaacctacccacaaattacttcagccatagattatcttaccttttcaagattatttttaa |
13435997 |
T |
|
| Q |
426 |
agattgtggcaataaagaaggcaataaaatcccaacatcgagtcaaagaaattgtgaaaaaatatccttcttctcaacctatcaaagaatgc |
517 |
Q |
| |
|
||||||||||||| | || |||| |||| ||||||| |||||||||||| |||||||||||| ||||||||| | ||||||| |||| |
|
|
| T |
13435998 |
ggattgtggcaatagataatgcaacaaaagtccaacataaagtcaaagaaatgacgaaaaaatatccctcttctcaagccatcaaaggatgc |
13436089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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