View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1429_low_50 (Length: 237)
Name: NF1429_low_50
Description: NF1429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1429_low_50 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 17 - 237
Target Start/End: Complemental strand, 4782954 - 4782733
Alignment:
| Q |
17 |
gtatgaactagcaattagaggaaataataggtgaaggaaaaggaagtgtagaagggtggtgttacattgaaatttgtggtttctggagtttgccatattt |
116 |
Q |
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| T |
4782954 |
gtatgaaatagcaattagaggaaataataggtgaaggaaaaggaagtgtagaagggtggtgttacattgaaatttgtggtttctggagtttgccatattt |
4782855 |
T |
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| Q |
117 |
gtgtgtaaagcttgttgttgttagagaagaatgtgaagagtaga-nnnnnnnncttcttgtgatgacttttgagacactacagattgcatgtatttattg |
215 |
Q |
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| T |
4782854 |
gtgtgtaaagcttgttgttgttagagaagaatgtgaagagtagatttttttttcttcttgtgatgacttttgagacactacagattgcatgtatttattg |
4782755 |
T |
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| Q |
216 |
ttatattcattgagaagcagga |
237 |
Q |
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|||||||||||||||||||||| |
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| T |
4782754 |
ttatattcattgagaagcagga |
4782733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 17 - 237
Target Start/End: Complemental strand, 4815383 - 4815162
Alignment:
| Q |
17 |
gtatgaactagcaattagaggaaataataggtgaaggaaaaggaagtgtagaagggtggtgttacattgaaatttgtggtttctggagtttgccatattt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4815383 |
gtatgaactagcaattagaggaaataataggtgaaggaaaaggaagtgtagaagggtggtgttacattgaaatttgtggtttctggagtttgccatattt |
4815284 |
T |
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| Q |
117 |
gtgtgtaaagcttgttgttgttagagaagaatgtgaagagtaga-nnnnnnnncttcttgtgatgacttttgagacactacagattgcatgtatttattg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||| |
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| T |
4815283 |
gtgtgtaaagcttgttgttgttagagaagaatgtgaagagtagatttatttttcttcctgtgatgacttttgagacactacaaattgcatgtatttattg |
4815184 |
T |
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| Q |
216 |
ttatattcattgagaagcagga |
237 |
Q |
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|||| |||||||||| |||||| |
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| T |
4815183 |
ttattttcattgagaggcagga |
4815162 |
T |
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