View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1429_low_56 (Length: 226)
Name: NF1429_low_56
Description: NF1429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1429_low_56 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 149; Significance: 7e-79; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 10 - 226
Target Start/End: Original strand, 32256795 - 32257012
Alignment:
| Q |
10 |
aagagggactaaggaaggagaaatgctatgtttaatgtcttacgaaataaaaatatgagcttcnnnnnnnnnnn-tgaagcacaaatatgaaaatgagtt |
108 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
32256795 |
aagagggaccaaggaaggagaaatgctatgtttaatgtcttacgaaataaaaaaatgagcttcgaaaaaaaaaaatgaagcacaaatatgaaaatgagtt |
32256894 |
T |
|
| Q |
109 |
aagaaatagtattaccagtcaaagatgaagattgttgtaatgttgctgctgatttgatttggtgacttctccttaactttggaaaggaattgagaagaag |
208 |
Q |
| |
|
| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
32256895 |
atgaaatagtattgccaatcaaagatgaagattgttgtaatgttgctgctgatttgatttggtgacttctccttaactttggaaaggaattgagaagagg |
32256994 |
T |
|
| Q |
209 |
cagaattatacaatgttc |
226 |
Q |
| |
|
|||||||||| ||||||| |
|
|
| T |
32256995 |
cagaattatataatgttc |
32257012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 10 - 213
Target Start/End: Original strand, 32265610 - 32265814
Alignment:
| Q |
10 |
aagagggactaaggaaggagaaatgctatgtttaatgtcttacgaaataaaaatatgagcttcnnnnnnnnnnn-tgaagcacaaatatgaaaatgagtt |
108 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||| ||| ||||||||||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
32265610 |
aagagggaccaaggaaggagaaatgatatgtttaatctctaacgaaataaaaatatgaacttcaaaacaaaaaaatgaagcacaaatatgaaaatgagtt |
32265709 |
T |
|
| Q |
109 |
aagaaatagtattaccagtcaaagatgaagattgttgtaatgttgctgctgatttgatttggtgacttctccttaactttggaaaggaattgagaagaag |
208 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||| |||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
32265710 |
tagaaatagtattaccactcaaagatgaggattgttgtaatgttcttgctgatttgattcggtgacttatcctcaactttggaaaggaattgagaagaag |
32265809 |
T |
|
| Q |
209 |
cagaa |
213 |
Q |
| |
|
||||| |
|
|
| T |
32265810 |
cagaa |
32265814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 23205426 - 23205488
Alignment:
| Q |
10 |
aagagggactaaggaaggagaaatgctatgtttaatgtcttacgaaataaaaatatgagcttc |
72 |
Q |
| |
|
||||| ||| ||||||||||||||||| ||||||||||| |||| ||||||||||||||||| |
|
|
| T |
23205426 |
aagagtgaccaaggaaggagaaatgctttgtttaatgtcaaacgagataaaaatatgagcttc |
23205488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 185
Target Start/End: Complemental strand, 3120912 - 3120844
Alignment:
| Q |
118 |
tattaccagtcaaagatgaagattgttgtaatgtt-gctgctgatttgatttggtgacttctccttaac |
185 |
Q |
| |
|
|||||||| ||| ||||||| |||| ||| |||| | |||||||||||||||| |||||||||||||| |
|
|
| T |
3120912 |
tattaccactcagagatgaaaattgatgttctgtttgttgctgatttgatttggagacttctccttaac |
3120844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University