View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1429_low_57 (Length: 223)
Name: NF1429_low_57
Description: NF1429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1429_low_57 |
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Alignment Details
Target: chr6 (Bit Score: 169; Significance: 8e-91; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 17 - 205
Target Start/End: Complemental strand, 11208898 - 11208710
Alignment:
| Q |
17 |
aatatggaacatgtatacaccaccagtgaacccaaccaaaatagtttatcaatttctgtttatgagggtgagaggcaaacaactaaggaaaacaacttgc |
116 |
Q |
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| T |
11208898 |
aatatggaagatgtatacaccaccagtgaacccaaccaaaatagtttatcaatttccgtttatgagggtgagaggcaaacaactaaggacaacaacttgc |
11208799 |
T |
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| Q |
117 |
ttggatcttttgagtttgaaattcctccacgtccaaaaggtgatcaaaaattcgtggtcaacttccaaattaacgatgatggcatctta |
205 |
Q |
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| T |
11208798 |
taggatcttttgagtttgaaattcctccatgtccaaaaggtgatcaaaaattcgtggtcaacttccaaattaacgatgatggcatctta |
11208710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 73 - 205
Target Start/End: Complemental strand, 11170020 - 11169888
Alignment:
| Q |
73 |
tgtttatgagggtgagaggcaaacaactaaggaaaacaacttgcttggatcttttgagtttgaaattcctccacgtccaaaaggtgatcaaaaattcgtg |
172 |
Q |
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| T |
11170020 |
tgtttatgagggtgagaggcaaataactaaggacaacaacttgctaggagcttttgagtttgaaattcctccacgtccaaaaggtgttctacatttcgtg |
11169921 |
T |
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| Q |
173 |
gtcaacttccaaattaacgatgatggcatctta |
205 |
Q |
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| T |
11169920 |
gtcaacttccaaattaacgatgatggcatctta |
11169888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 75 - 205
Target Start/End: Complemental strand, 11275402 - 11275272
Alignment:
| Q |
75 |
tttatgagggtgagaggcaaacaactaaggaaaacaacttgcttggatcttttgagtttgaaattcctccacgtccaaaaggtgatcaaaaattcgtggt |
174 |
Q |
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| T |
11275402 |
tttatgagggtgagaggaaaacaactaaggacaacaacttgctaggaacttttaggtttgaaattcctccatgtccagtagatgttcctcaattggtggt |
11275303 |
T |
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| Q |
175 |
caacttccaaattaacgatgatggcatctta |
205 |
Q |
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| T |
11275302 |
caacttccaaattgacaatgatggcatctta |
11275272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 121
Target Start/End: Complemental strand, 11155741 - 11155693
Alignment:
| Q |
73 |
tgtttatgagggtgagaggcaaacaactaaggaaaacaacttgcttgga |
121 |
Q |
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| T |
11155741 |
tgtttatgaaggtgagaggaaaataactagggaaaacaacttgcttgga |
11155693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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