View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1429_low_6 (Length: 574)
Name: NF1429_low_6
Description: NF1429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1429_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 497; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 13 - 558
Target Start/End: Original strand, 52141163 - 52141709
Alignment:
| Q |
13 |
aaggtaagtaggtaactaaaaactgtatttaacattcattttcatttgaatgatttcaagtaactcatgcatgaatatgataatgcagaagcctagttca |
112 |
Q |
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| T |
52141163 |
aaggtaagtaggtaactaaaaactgtatttaacattcattttcatttgaatgatatcaagtaactcatgcatgaatatgataatgcagaagcctagttca |
52141262 |
T |
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| Q |
113 |
gcaatgaaggaattgatttccaaacaagttgtgcaaaccaagcaaatgatttccaaacaagccgttaaaatcgtgaaacgagcagaagaacacgaaaagc |
212 |
Q |
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| T |
52141263 |
gcaatgaaggaattgatttccaaacaagttgtgcaaaccaagcaaatgatttccaaacaagccgttaaaatcgtgaaacgagcagaagaacacgaaaagc |
52141362 |
T |
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| Q |
213 |
tcatggccaaggtttcttttcagttcttgcttacaattaatatcattcnnnnnnnnnn-cttttcagaataaacaacattcttatgctgatttgttgatt |
311 |
Q |
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| T |
52141363 |
tcatcgccaaggtttcttttcagttcttgcttacaattaatatcattctttttttttttcttttcagaataaacaacattcttatgctgatttgttgatt |
52141462 |
T |
|
| Q |
312 |
ttataacaaatctttttcaggtcactcatcttgtgggggttcttggttatggtagcttctgctttctcttggcagcaagtaagtgttaatctctttcaat |
411 |
Q |
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| T |
52141463 |
ttataacaaatctttttcaggtcactcatcttgtgggggttcttggttatggtagcttctgctttctcttgggagcaagtaagtgttaatctctttcaat |
52141562 |
T |
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| Q |
412 |
gtttttctttggaatcgattaattcatatatagtttcttttttcactctctttgaatgttcaggaccccaagacattccctatgtgtattgtttgttcta |
511 |
Q |
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| T |
52141563 |
gtttttctttggaatcgattaattcatatatagtttcttttttcactctctttgaatgttcaggaccccaagacattccctatgtgtattgtttgttcta |
52141662 |
T |
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| Q |
512 |
cgtcttctttgttcctcttcgttggatttactataagttcaagaaat |
558 |
Q |
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| T |
52141663 |
cgtcttctttgttcctcttcgttggatttactataagttcaagaaat |
52141709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 495 - 558
Target Start/End: Complemental strand, 17808162 - 17808099
Alignment:
| Q |
495 |
gtgtattgtttgttctacgtcttctttgttcctcttcgttggatttactataagttcaagaaat |
558 |
Q |
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| T |
17808162 |
gtgtattgtttgttctactttgtgtttgttcctcttcgttggatatactatagattcaagaaat |
17808099 |
T |
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