View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1429_low_60 (Length: 219)
Name: NF1429_low_60
Description: NF1429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1429_low_60 |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 17 - 200
Target Start/End: Original strand, 12036731 - 12036914
Alignment:
| Q |
17 |
cacagactttatccttcatgatgaatctggtgcagcacagcaacttgagatgcttgaaatcattgatttgttcatcactggatttatattgccactggaa |
116 |
Q |
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| T |
12036731 |
cacagactttatccttcatgatgaatctggtgcagcacagcaacttgagatgcttgaaatcaatgatttgttcatcactggacttatattgccactggaa |
12036830 |
T |
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| Q |
117 |
gcaagtgcagacaagaaaaaagagcaaggtgtccgatgtgaaggctttggtcgaattgaatcgtgggatatatcttgttatgaa |
200 |
Q |
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| T |
12036831 |
gcaagtgcagacaagaaaaaagagcaaggtatccgatgtgaaggctttggtcgaattgaatcgtgggatatatctggttatgaa |
12036914 |
T |
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Target: chr3 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 17 - 200
Target Start/End: Complemental strand, 8063039 - 8062856
Alignment:
| Q |
17 |
cacagactttatccttcatgatgaatctggtgcagcacagcaacttgagatgcttgaaatcattgatttgttcatcactggatttatattgccactggaa |
116 |
Q |
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| T |
8063039 |
cacagactttatccttcatgatgaatctggtgcagcacagcaacttgagatgcatgaaatcaatgatttgttcatcactggacttatattgccactggaa |
8062940 |
T |
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| Q |
117 |
gcaagtgcagacaagaaaaaagagcaaggtgtccgatgtgaaggctttggtcgaattgaatcgtgggatatatcttgttatgaa |
200 |
Q |
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| T |
8062939 |
gcaagcgtagacaagaaaaaagagcaaggtgtccgatgtgaaggctttggtcgaattgaatcgtgggatatatctggctatgaa |
8062856 |
T |
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Target: chr2 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 17 - 200
Target Start/End: Complemental strand, 20165701 - 20165518
Alignment:
| Q |
17 |
cacagactttatccttcatgatgaatctggtgcagcacagcaacttgagatgcttgaaatcattgatttgttcatcactggatttatattgccactggaa |
116 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
20165701 |
cacagactttatccttcatgatgaatctggtgcagcaaagcaacttgagatgcttgaaatcaatgatttgttcatcactggacttatattgccactggaa |
20165602 |
T |
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| Q |
117 |
gcaagtgcagacaagaaaaaagagcaaggtgtccgatgtgaaggctttggtcgaattgaatcgtgggatatatcttgttatgaa |
200 |
Q |
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| T |
20165601 |
gcaagcacatacaagaaaaaagagcaaggtgtccgatgtgaaggctttggtcgaattgaatcgtgggatatatctggttatgaa |
20165518 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 17 - 200
Target Start/End: Complemental strand, 24282446 - 24282263
Alignment:
| Q |
17 |
cacagactttatccttcatgatgaatctggtgcagcacagcaacttgagatgcttgaaatcattgatttgttcatcactggatttatattgccactggaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||| ||||||||||||||||| |
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| T |
24282446 |
cacagactttatccttcatgatgaatctggtgcagcacagcaacttgagatgcttgaactcaatgatttgtttatcactggacttatattgccactggaa |
24282347 |
T |
|
| Q |
117 |
gcaagtgcagacaagaaaaaagagcaaggtgtccgatgtgaaggctttggtcgaattgaatcgtgggatatatcttgttatgaa |
200 |
Q |
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|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
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| T |
24282346 |
gcaagtacagacaagaaaaaagagcaaggcgtccgatgtgaaggctttggtcgaattgagtcgtgggatatatctggttatgaa |
24282263 |
T |
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