View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1429_low_62 (Length: 212)

Name: NF1429_low_62
Description: NF1429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1429_low_62
NF1429_low_62
[»] scaffold0096 (2 HSPs)
scaffold0096 (85-159)||(32654-32728)
scaffold0096 (5-55)||(32574-32624)
[»] chr3 (30 HSPs)
chr3 (85-159)||(17689609-17689683)
chr3 (85-144)||(12531191-12531250)
chr3 (85-159)||(24124603-24124677)
chr3 (85-159)||(31687811-31687885)
chr3 (85-144)||(53972387-53972446)
chr3 (1-55)||(12531275-12531329)
chr3 (85-155)||(19769832-19769902)
chr3 (85-159)||(37985025-37985099)
chr3 (1-55)||(17689525-17689579)
chr3 (85-159)||(19881196-19881270)
chr3 (1-55)||(37984941-37984995)
chr3 (1-55)||(19881300-19881354)
chr3 (1-55)||(31687727-31687781)
chr3 (1-55)||(53972476-53972530)
chr3 (1-55)||(19769749-19769803)
chr3 (1-42)||(24124720-24124761)
chr3 (85-155)||(33648126-33648196)
chr3 (85-159)||(50836106-50836180)
chr3 (85-159)||(50839673-50839747)
chr3 (86-155)||(24758767-24758836)
chr3 (86-155)||(24767764-24767833)
chr3 (86-155)||(24813305-24813374)
chr3 (86-155)||(24827178-24827247)
chr3 (168-212)||(11783529-11783573)
chr3 (85-144)||(32013738-32013797)
chr3 (85-155)||(53024673-53024743)
chr3 (1-38)||(24758882-24758919)
chr3 (1-38)||(24767879-24767916)
chr3 (1-38)||(24813222-24813259)
chr3 (1-38)||(24827095-24827132)
[»] scaffold0596 (2 HSPs)
scaffold0596 (85-159)||(1614-1688)
scaffold0596 (1-55)||(1530-1584)
[»] chr8 (12 HSPs)
chr8 (85-159)||(14672346-14672420)
chr8 (85-159)||(27535273-27535347)
chr8 (85-154)||(8164072-8164141)
chr8 (1-55)||(8163989-8164042)
chr8 (5-55)||(27535377-27535427)
chr8 (1-45)||(14672460-14672504)
chr8 (85-144)||(11730980-11731039)
chr8 (85-144)||(23741292-23741351)
chr8 (85-144)||(23741389-23741448)
chr8 (109-159)||(5662531-5662581)
chr8 (109-159)||(31098581-31098631)
chr8 (168-212)||(23490091-23490135)
[»] chr2 (12 HSPs)
chr2 (85-159)||(12742916-12742990)
chr2 (85-159)||(23347753-23347827)
chr2 (1-55)||(12742832-12742886)
chr2 (1-55)||(18354184-18354238)
chr2 (1-55)||(23347857-23347911)
chr2 (1-55)||(10328216-10328270)
chr2 (85-136)||(10328135-10328186)
chr2 (91-132)||(18354106-18354148)
chr2 (85-138)||(3627461-3627514)
chr2 (168-212)||(17989109-17989153)
chr2 (168-212)||(19263775-19263819)
chr2 (168-212)||(37794773-37794817)
[»] chr5 (16 HSPs)
chr5 (85-144)||(9045077-9045136)
chr5 (85-159)||(30441369-30441443)
chr5 (1-55)||(30441473-30441527)
chr5 (1-55)||(30442773-30442827)
chr5 (1-55)||(32872048-32872102)
chr5 (85-159)||(32872132-32872206)
chr5 (87-159)||(7472281-7472353)
chr5 (1-55)||(7472385-7472439)
chr5 (1-55)||(9044993-9045047)
chr5 (1-55)||(22002929-22002983)
chr5 (85-159)||(30442669-30442743)
chr5 (85-159)||(22002825-22002899)
chr5 (168-212)||(13424758-13424802)
chr5 (85-154)||(36971121-36971190)
chr5 (109-144)||(22004588-22004623)
chr5 (168-212)||(16341536-16341580)
[»] chr7 (10 HSPs)
chr7 (85-159)||(1264876-1264950)
chr7 (85-159)||(48846988-48847062)
chr7 (89-159)||(26906540-26906610)
chr7 (1-55)||(43070259-43070313)
chr7 (85-141)||(43070173-43070229)
chr7 (1-55)||(14232069-14232123)
chr7 (1-55)||(26906644-26906698)
chr7 (85-159)||(14237167-14237241)
chr7 (1-55)||(1264792-1264846)
chr7 (12-55)||(48847092-48847135)
[»] chr6 (7 HSPs)
chr6 (85-159)||(31891255-31891329)
chr6 (1-54)||(31891360-31891413)
chr6 (1-55)||(21999241-21999295)
chr6 (109-159)||(33043142-33043192)
chr6 (87-144)||(21999151-21999208)
chr6 (168-212)||(32296367-32296411)
chr6 (113-159)||(2918375-2918421)
[»] chr1 (3 HSPs)
chr1 (85-160)||(25226923-25226998)
chr1 (1-55)||(25226839-25226893)
chr1 (168-212)||(32617691-32617735)
[»] scaffold0035 (2 HSPs)
scaffold0035 (85-159)||(37225-37299)
scaffold0035 (1-45)||(37141-37185)
[»] chr4 (7 HSPs)
chr4 (85-159)||(29861240-29861314)
chr4 (85-160)||(48289900-48289975)
chr4 (1-45)||(29861354-29861398)
chr4 (85-154)||(32584898-32584967)
chr4 (168-212)||(28146986-28147030)
chr4 (168-212)||(11440592-11440636)
chr4 (168-212)||(55606368-55606412)
[»] scaffold0045 (2 HSPs)
scaffold0045 (85-159)||(10088-10162)
scaffold0045 (1-55)||(10192-10245)


Alignment Details
Target: scaffold0096 (Bit Score: 63; Significance: 1e-27; HSPs: 2)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 85 - 159
Target Start/End: Original strand, 32654 - 32728
Alignment:
Q  85 gtaatgaataatatcggaactttgttagcttctccatttttaatgtcccgggcgttagcatgagtaaaagtccta 159  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  32654 gtaatgaataatatcagaactttgttagcttctccatttttaatgtcccgggcgttagcacgggtaaaagtccta 32728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 32574 - 32624
Alignment:
Q  5 aaggagatattcgaaaatgtgtgacccaatattttgtatgctcttaaatac 55  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  32574 aaggagatattcgaaaatgtgtgacccaatattttgtatgcccttaaatac 32624  T

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Target: chr3 (Bit Score: 63; Significance: 1e-27; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 85 - 159
Target Start/End: Original strand, 17689609 - 17689683
Alignment:
Q  85 gtaatgaataatatcggaactttgttagcttctccatttttaatgtcccgggcgttagcatgagtaaaagtccta 159  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  17689609 gtaatgaataatatcggaacttttttagcttctccatttttaatgtcccgggcgttagcacgggtaaaagtccta 17689683  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 85 - 144
Target Start/End: Complemental strand, 12531250 - 12531191
Alignment:
Q  85 gtaatgaataatatcggaactttgttagcttctccatttttaatgtcccgggcgttagca 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12531250 gtaatgaataatatcggaactttgttagcttctccatttttaatgtcccgggcgttagca 12531191  T

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Target: chr3; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 85 - 159
Target Start/End: Complemental strand, 24124677 - 24124603
Alignment:
Q  85 gtaatgaataatatcggaactttgttagcttctccatttttaatgtcccgggcgttagcatgagtaaaagtccta 159  Q
    |||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||| | ||||||||||||    
T  24124677 gtaatgaataatatcggaacatttttagcttcttcatttttaatgtcccgggcgttagcaagggtaaaagtccta 24124603  T

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Target: chr3; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 85 - 159
Target Start/End: Original strand, 31687811 - 31687885
Alignment:
Q  85 gtaatgaataatatcggaactttgttagcttctccatttttaatgtcccgggcgttagcatgagtaaaagtccta 159  Q
    ||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||| | ||||||||||||    
T  31687811 gtaatgaataatatcggaactttttttgcttcttcatttttaatgtcccgggcgttagcacgggtaaaagtccta 31687885  T

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Target: chr3; HSP #5
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 85 - 144
Target Start/End: Complemental strand, 53972446 - 53972387
Alignment:
Q  85 gtaatgaataatatcggaactttgttagcttctccatttttaatgtcccgggcgttagca 144  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||    
T  53972446 gtaatgaataatatcggaacttttttagcttctccatttttaatgttccgggcgttagca 53972387  T

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Target: chr3; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 12531329 - 12531275
Alignment:
Q  1 ttataaggagatattcgaaaatgtgtgacccaatattttgtatgctcttaaatac 55  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  12531329 ttataaggagatattcgaaaatgtgtgacccaatattttgtatgcccttaaatac 12531275  T

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Target: chr3; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 85 - 155
Target Start/End: Original strand, 19769832 - 19769902
Alignment:
Q  85 gtaatgaataatatcggaactttgttagcttctccatttttaatgtcccgggcgttagcatgagtaaaagt 155  Q
    |||||||||||||||  |||||| |||||||||||||||||||||||||||||||||||| | ||||||||    
T  19769832 gtaatgaataatatcaaaacttttttagcttctccatttttaatgtcccgggcgttagcacgggtaaaagt 19769902  T

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Target: chr3; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 85 - 159
Target Start/End: Original strand, 37985025 - 37985099
Alignment:
Q  85 gtaatgaataatatcggaactttgttagcttctccatttttaatgtcccgggcgttagcatgagtaaaagtccta 159  Q
    ||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||| | |||| |||||||    
T  37985025 gtaatgaataatatcggaacttttttaacttctccgtttttaatgtcccgggcgttagcacgggtaatagtccta 37985099  T

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Target: chr3; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 17689525 - 17689579
Alignment:
Q  1 ttataaggagatattcgaaaatgtgtgacccaatattttgtatgctcttaaatac 55  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  17689525 ttataaggaaatattcgaaaatgtgtgacccaatattttgtatgcccttaaatac 17689579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 85 - 159
Target Start/End: Complemental strand, 19881270 - 19881196
Alignment:
Q  85 gtaatgaataatatcggaactttgttagcttctccatttttaatgtcccgggcgttagcatgagtaaaagtccta 159  Q
    ||||| ||||||||||||||||| ||| ||||||||||||||||||||||| |||||||| | |||| |||||||    
T  19881270 gtaataaataatatcggaacttttttaacttctccatttttaatgtcccggacgttagcacgggtaatagtccta 19881196  T

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Target: chr3; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 37984941 - 37984995
Alignment:
Q  1 ttataaggagatattcgaaaatgtgtgacccaatattttgtatgctcttaaatac 55  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||    
T  37984941 ttataagaagatattcgaaaatgtgtgacccaatattttgtatgcccttaaatac 37984995  T

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Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 19881354 - 19881300
Alignment:
Q  1 ttataaggagatattcgaaaatgtgtgacccaatattttgtatgctcttaaatac 55  Q
    |||||| ||||||||||||||||||||||||||||||||||||||  ||||||||    
T  19881354 ttataaagagatattcgaaaatgtgtgacccaatattttgtatgcctttaaatac 19881300  T

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Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 31687727 - 31687781
Alignment:
Q  1 ttataaggagatattcgaaaatgtgtgacccaatattttgtatgctcttaaatac 55  Q
    ||||||||| ||||||||||||||||||||||||||||||||||  |||||||||    
T  31687727 ttataaggaaatattcgaaaatgtgtgacccaatattttgtatggccttaaatac 31687781  T

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Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 53972530 - 53972476
Alignment:
Q  1 ttataaggagatattcgaaaatgtgtgacccaatattttgtatgctcttaaatac 55  Q
    |||||| ||||||||||||||||||||||||||||||| |||||| |||||||||    
T  53972530 ttataaagagatattcgaaaatgtgtgacccaatatttcgtatgcccttaaatac 53972476  T

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Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 19769749 - 19769803
Alignment:
Q  1 ttataaggagatattcgaaaatgtgtgacccaatattttgtatgctcttaaatac 55  Q
    ||||||||||||||| ||||||||||||  ||||||||||||||| |||||||||    
T  19769749 ttataaggagatatttgaaaatgtgtgattcaatattttgtatgcccttaaatac 19769803  T

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Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 24124761 - 24124720
Alignment:
Q  1 ttataaggagatattcgaaaatgtgtgacccaatattttgta 42  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  24124761 ttataaggaaatattcgaaaatgtgtgacccaatattttgta 24124720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 85 - 155
Target Start/End: Complemental strand, 33648196 - 33648126
Alignment:
Q  85 gtaatgaataatatcggaactttgttagcttctccatttttaatgtcccgggcgttagcatgagtaaaagt 155  Q
    |||||||||||  |||||||||| ||| ||| ||||||||||||||||| |||| ||||| | ||||||||    
T  33648196 gtaatgaataaattcggaacttttttaacttttccatttttaatgtcccaggcggtagcacgggtaaaagt 33648126  T

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Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 85 - 159
Target Start/End: Original strand, 50836106 - 50836180
Alignment:
Q  85 gtaatgaataatatcggaactttgttagcttctccatttttaatgtcccgggcgttagcatgagtaaaagtccta 159  Q
    ||||||||||   |||||||||| | | |||||||||||||||||||||||||| ||||| | ||||||| ||||    
T  50836106 gtaatgaatatattcggaactttttcaacttctccatttttaatgtcccgggcggtagcacgggtaaaaggccta 50836180  T

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Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 85 - 159
Target Start/End: Complemental strand, 50839747 - 50839673
Alignment:
Q  85 gtaatgaataatatcggaactttgttagcttctccatttttaatgtcccgggcgttagcatgagtaaaagtccta 159  Q
    ||||||||||   |||||||||| | | |||||||||||||||||||||||||| ||||| | ||||||| ||||    
T  50839747 gtaatgaatatattcggaactttttcaacttctccatttttaatgtcccgggcggtagcacgggtaaaaggccta 50839673  T

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Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 155
Target Start/End: Complemental strand, 24758836 - 24758767
Alignment:
Q  86 taatgaataatatcggaactttgttagcttctccatttttaatgtcccgggcgttagcatgagtaaaagt 155  Q
    ||||||||||  ||||||||||  || ||| |||||||||||||||||||||| ||||| | ||||||||    
T  24758836 taatgaataaattcggaacttttataacttttccatttttaatgtcccgggcggtagcacgggtaaaagt 24758767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 155
Target Start/End: Complemental strand, 24767833 - 24767764
Alignment:
Q  86 taatgaataatatcggaactttgttagcttctccatttttaatgtcccgggcgttagcatgagtaaaagt 155  Q
    ||||||||||  ||||||||||  || ||| |||||||||||||||||||||| ||||| | ||||||||    
T  24767833 taatgaataaattcggaacttttataacttttccatttttaatgtcccgggcggtagcacgggtaaaagt 24767764  T

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Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 155
Target Start/End: Original strand, 24813305 - 24813374
Alignment:
Q  86 taatgaataatatcggaactttgttagcttctccatttttaatgtcccgggcgttagcatgagtaaaagt 155  Q
    ||||||||||  ||| ||||||  |||||| |||||||||||||||||||||| ||||| | ||||||||    
T  24813305 taatgaataaattcgaaacttttatagcttttccatttttaatgtcccgggcggtagcacgggtaaaagt 24813374  T

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Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 155
Target Start/End: Original strand, 24827178 - 24827247
Alignment:
Q  86 taatgaataatatcggaactttgttagcttctccatttttaatgtcccgggcgttagcatgagtaaaagt 155  Q
    ||||||||||  ||||||||||  || ||| |||||||||||||||||||||| ||||| | ||||||||    
T  24827178 taatgaataaattcggaacttttataacttttccatttttaatgtcccgggcggtagcacgggtaaaagt 24827247  T

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Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 11783573 - 11783529
Alignment:
Q  168 caattgagataaatgaaagtaatatttttagtacatatttgatca 212  Q
    ||||||||||| |||||| | ||||||||||||||||||||||||    
T  11783573 caattgagatagatgaaaatcatatttttagtacatatttgatca 11783529  T

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Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 144
Target Start/End: Complemental strand, 32013797 - 32013738
Alignment:
Q  85 gtaatgaataatatcggaactttgttagcttctccatttttaatgtcccgggcgttagca 144  Q
    ||||| |||||||| |||  ||| |||||||| ||||||||||||||||||||| |||||    
T  32013797 gtaataaataatattggatattttttagcttccccatttttaatgtcccgggcggtagca 32013738  T

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Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 155
Target Start/End: Complemental strand, 53024743 - 53024673
Alignment:
Q  85 gtaatgaataatatcggaactttgttagcttctccatttttaatgtcccgggcgttagcatgagtaaaagt 155  Q
    |||||||||||  || |||||||  |||||| ||||||||||||||||||| || ||||| | ||||||||    
T  53024743 gtaatgaataaattcagaacttttatagcttttccatttttaatgtcccggacggtagcacgggtaaaagt 53024673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 24758919 - 24758882
Alignment:
Q  1 ttataaggagatattcgaaaatgtgtgacccaatattt 38  Q
    ||||||||||||||| ||||||||||||||||| ||||    
T  24758919 ttataaggagatatttgaaaatgtgtgacccaaaattt 24758882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 24767916 - 24767879
Alignment:
Q  1 ttataaggagatattcgaaaatgtgtgacccaatattt 38  Q
    ||||||||||||||| ||||||||||||||||| ||||    
T  24767916 ttataaggagatatttgaaaatgtgtgacccaaaattt 24767879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 24813222 - 24813259
Alignment:
Q  1 ttataaggagatattcgaaaatgtgtgacccaatattt 38  Q
    ||||||||||||||| ||||||||||||||||| ||||    
T  24813222 ttataaggagatatttgaaaatgtgtgacccaaaattt 24813259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 24827095 - 24827132
Alignment:
Q  1 ttataaggagatattcgaaaatgtgtgacccaatattt 38  Q
    ||||||||||||||| ||||||||||||||||| ||||    
T  24827095 ttataaggagatatttgaaaatgtgtgacccaaaattt 24827132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0596 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 85 - 159
Target Start/End: Original strand, 1614 - 1688
Alignment:
Q  85 gtaatgaataatatcggaactttgttagcttctccatttttaatgtcccgggcgttagcatgagtaaaagtccta 159  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||| |||||||    
T  1614 gtaatgaataatatcggaacttttttagcttctccatttttaatgtcccgggcgttagcacgggtaatagtccta 1688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0596; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 1530 - 1584
Alignment:
Q  1 ttataaggagatattcgaaaatgtgtgacccaatattttgtatgctcttaaatac 55  Q
    |||||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  1530 ttataaagagatattcgaaaatgtgtgacccaatattttgtatgcccttaaatac 1584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 85 - 159
Target Start/End: Complemental strand, 14672420 - 14672346
Alignment:
Q  85 gtaatgaataatatcggaactttgttagcttctccatttttaatgtcccgggcgttagcatgagtaaaagtccta 159  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| | ||||||||||||    
T  14672420 gtaatgaataatatcggaacttttttagcttcttcatttttaatgtcccgggcgttagcacgggtaaaagtccta 14672346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 85 - 159
Target Start/End: Complemental strand, 27535347 - 27535273
Alignment:
Q  85 gtaatgaataatatcggaactttgttagcttctccatttttaatgtcccgggcgttagcatgagtaaaagtccta 159  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||| | ||||||||||||    
T  27535347 gtaatgaataatatcagaacttttttagcttctccatttttaatgtcccgagcgttagcacgggtaaaagtccta 27535273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 85 - 154
Target Start/End: Original strand, 8164072 - 8164141
Alignment:
Q  85 gtaatgaataatatcggaactttgttagcttctccatttttaatgtcccgggcgttagcatgagtaaaag 154  Q
    ||||||||||||||| ||||||| ||| |||||||||||||||||||||||||| ||||| | |||||||    
T  8164072 gtaatgaataatatcagaacttttttaacttctccatttttaatgtcccgggcggtagcacgggtaaaag 8164141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 8163989 - 8164042
Alignment:
Q  1 ttataaggagatattcgaaaatgtgtgacccaatattttgtatgctcttaaatac 55  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  8163989 ttataaggagatattcgaaaatgtgtgacccaata-tttgtatgcccttaaatac 8164042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 27535427 - 27535377
Alignment:
Q  5 aaggagatattcgaaaatgtgtgacccaatattttgtatgctcttaaatac 55  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  27535427 aaggagatatttgaaaatgtgtgacccaatattttgtatgcccttaaatac 27535377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 14672504 - 14672460
Alignment:
Q  1 ttataaggagatattcgaaaatgtgtgacccaatattttgtatgc 45  Q
    ||||||||| |||||||||||||||||||||||||||||||||||    
T  14672504 ttataaggaaatattcgaaaatgtgtgacccaatattttgtatgc 14672460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 144
Target Start/End: Original strand, 11730980 - 11731039
Alignment:
Q  85 gtaatgaataatatcggaactttgttagcttctccatttttaatgtcccgggcgttagca 144  Q
    ||||||||||   |||||||||| ||||||||||||||||||||||| |||||| |||||    
T  11730980 gtaatgaatatattcggaacttttttagcttctccatttttaatgtctcgggcggtagca 11731039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 144
Target Start/End: Original strand, 23741292 - 23741351
Alignment:
Q  85 gtaatgaataatatcggaactttgttagcttctccatttttaatgtcccgggcgttagca 144  Q
    ||||||||||   |||||||||| ||||||||||||||||||||||| |||||| |||||    
T  23741292 gtaatgaatatattcggaacttttttagcttctccatttttaatgtctcgggcggtagca 23741351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 144
Target Start/End: Original strand, 23741389 - 23741448
Alignment:
Q  85 gtaatgaataatatcggaactttgttagcttctccatttttaatgtcccgggcgttagca 144  Q
    ||||||||||   |||||||||| ||||||||||||||||||||||| |||||| |||||    
T  23741389 gtaatgaatatattcggaacttttttagcttctccatttttaatgtctcgggcggtagca 23741448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 109 - 159
Target Start/End: Original strand, 5662531 - 5662581
Alignment:
Q  109 ttagcttctccatttttaatgtcccgggcgttagcatgagtaaaagtccta 159  Q
    |||||||||||||||||||||||| ||||||||||| | | ||||||||||    
T  5662531 ttagcttctccatttttaatgtcctgggcgttagcacgggcaaaagtccta 5662581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 159
Target Start/End: Complemental strand, 31098631 - 31098581
Alignment:
Q  109 ttagcttctccatttttaatgtcccgggcgttagcatgagtaaaagtccta 159  Q
    ||||||||||||||||||||  |||||||||||||| | | ||||||||||    
T  31098631 ttagcttctccatttttaataccccgggcgttagcacgggcaaaagtccta 31098581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 23490135 - 23490091
Alignment:
Q  168 caattgagataaatgaaagtaatatttttagtacatatttgatca 212  Q
    ||||||||||| |||||| | |||||||| |||||||||||||||    
T  23490135 caattgagatagatgaaaatcatatttttcgtacatatttgatca 23490091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 85 - 159
Target Start/End: Original strand, 12742916 - 12742990
Alignment:
Q  85 gtaatgaataatatcggaactttgttagcttctccatttttaatgtcccgggcgttagcatgagtaaaagtccta 159  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||| |||||||    
T  12742916 gtaatgaataatatcggaacttttttagcttctccatttttaatgtcccgggcgttagcacgggtaatagtccta 12742990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 85 - 159
Target Start/End: Complemental strand, 23347827 - 23347753
Alignment:
Q  85 gtaatgaataatatcggaactttgttagcttctccatttttaatgtcccgggcgttagcatgagtaaaagtccta 159  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||| |||||||    
T  23347827 gtaatgaataatatcggaacttttttagcttctccatttttaatgtcccgggcgttagcacgggtaatagtccta 23347753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 12742832 - 12742886
Alignment:
Q  1 ttataaggagatattcgaaaatgtgtgacccaatattttgtatgctcttaaatac 55  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  12742832 ttataaggagatattcgaaaatgtgtgacccaatattttgtatgcccttaaatac 12742886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 18354238 - 18354184
Alignment:
Q  1 ttataaggagatattcgaaaatgtgtgacccaatattttgtatgctcttaaatac 55  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  18354238 ttataaggagatattcgaaaatgtgtgacccaatattttgtatgcccttaaatac 18354184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 23347911 - 23347857
Alignment:
Q  1 ttataaggagatattcgaaaatgtgtgacccaatattttgtatgctcttaaatac 55  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  23347911 ttataaggagatattcgaaaatgtgtgacccaatattttgtatgcccttaaatac 23347857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 10328270 - 10328216
Alignment:
Q  1 ttataaggagatattcgaaaatgtgtgacccaatattttgtatgctcttaaatac 55  Q
    |||||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  10328270 ttataaagagatattcgaaaatgtgtgacccaatattttgtatgcccttaaatac 10328216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 85 - 136
Target Start/End: Complemental strand, 10328186 - 10328135
Alignment:
Q  85 gtaatgaataatatcggaactttgttagcttctccatttttaatgtcccggg 136  Q
    ||||||||||||||| ||||||| ||| ||||||||||||||||||||||||    
T  10328186 gtaatgaataatatcagaacttttttaacttctccatttttaatgtcccggg 10328135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 132
Target Start/End: Complemental strand, 18354148 - 18354106
Alignment:
Q  91 aataatatcggaactttgtt-agcttctccatttttaatgtcc 132  Q
    ||||||||||||||||| || ||||||||||||||||||||||    
T  18354148 aataatatcggaactttttttagcttctccatttttaatgtcc 18354106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 85 - 138
Target Start/End: Original strand, 3627461 - 3627514
Alignment:
Q  85 gtaatgaataatatcggaactttgttagcttctccatttttaatgtcccgggcg 138  Q
    |||||||||||||| |||  ||| |||||||||||||||||||| |||| ||||    
T  3627461 gtaatgaataatattggattttttttagcttctccatttttaatatcccaggcg 3627514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 17989153 - 17989109
Alignment:
Q  168 caattgagataaatgaaagtaatatttttagtacatatttgatca 212  Q
    ||||||||||  |||||| | ||||||||||||||||||||||||    
T  17989153 caattgagatcgatgaaaatcatatttttagtacatatttgatca 17989109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 19263775 - 19263819
Alignment:
Q  168 caattgagataaatgaaagtaatatttttagtacatatttgatca 212  Q
    ||||||||||| |||||| | ||||||||| ||||||||||||||    
T  19263775 caattgagatagatgaaaatcatatttttaatacatatttgatca 19263819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 37794817 - 37794773
Alignment:
Q  168 caattgagataaatgaaagtaatatttttagtacatatttgatca 212  Q
    ||||||||||| | |||| | ||||||||||||||||||||||||    
T  37794817 caattgagatagaagaaaatcatatttttagtacatatttgatca 37794773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 85 - 144
Target Start/End: Original strand, 9045077 - 9045136
Alignment:
Q  85 gtaatgaataatatcggaactttgttagcttctccatttttaatgtcccgggcgttagca 144  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  9045077 gtaatgaataatatcggaacttttttagcttctccatttttaatgtcccgggcgttagca 9045136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 85 - 159
Target Start/End: Complemental strand, 30441443 - 30441369
Alignment:
Q  85 gtaatgaataatatcggaactttgttagcttctccatttttaatgtcccgggcgttagcatgagtaaaagtccta 159  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| | |||| |||||||    
T  30441443 gtaatgaataatatcggaacttttttagcttctccatttttaatgtcccggacgttagcacgggtaatagtccta 30441369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 30441527 - 30441473
Alignment:
Q  1 ttataaggagatattcgaaaatgtgtgacccaatattttgtatgctcttaaatac 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30441527 ttataaggagatattcgaaaatgtgtgacccaatattttgtatgctcttaaatac 30441473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 30442827 - 30442773
Alignment:
Q  1 ttataaggagatattcgaaaatgtgtgacccaatattttgtatgctcttaaatac 55  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  30442827 ttataaggagatattcgaaaatgtgtgacccaatattttgtatgcccttaaatac 30442773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 32872048 - 32872102
Alignment:
Q  1 ttataaggagatattcgaaaatgtgtgacccaatattttgtatgctcttaaatac 55  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  32872048 ttataaggagatattcgaaaatgtgtgacccaatattttgtatgcccttaaatac 32872102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 85 - 159
Target Start/End: Original strand, 32872132 - 32872206
Alignment:
Q  85 gtaatgaataatatcggaactttgttagcttctccatttttaatgtcccgggcgttagcatgagtaaaagtccta 159  Q
    |||||||||||| ||| |||||| ||||||||| |||||||||||||||||||||||||| | ||||||||||||    
T  32872132 gtaatgaataatttcgtaacttttttagcttcttcatttttaatgtcccgggcgttagcacgggtaaaagtccta 32872206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 87 - 159
Target Start/End: Complemental strand, 7472353 - 7472281
Alignment:
Q  87 aatgaataatatcggaactttgttagcttctccatttttaatgtcccgggcgttagcatgagtaaaagtccta 159  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||| | |||| |||||||    
T  7472353 aatgaataatatcggaacttttttagcttctctatttttaatgtcccggacgttagcacgtgtaatagtccta 7472281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 7472439 - 7472385
Alignment:
Q  1 ttataaggagatattcgaaaatgtgtgacccaatattttgtatgctcttaaatac 55  Q
    ||||||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  7472439 ttataaggagatattcgaaaatgtgtgacccaatattttgtatacccttaaatac 7472385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 9044993 - 9045047
Alignment:
Q  1 ttataaggagatattcgaaaatgtgtgacccaatattttgtatgctcttaaatac 55  Q
    |||||||||||||||||||||| |||||||||||||||||||||| |||||||||    
T  9044993 ttataaggagatattcgaaaatctgtgacccaatattttgtatgcccttaaatac 9045047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 22002983 - 22002929
Alignment:
Q  1 ttataaggagatattcgaaaatgtgtgacccaatattttgtatgctcttaaatac 55  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  22002983 ttataaggagatattcgaaaacgtgtgacccaatattttgtatgcccttaaatac 22002929  T

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Target: chr5; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 85 - 159
Target Start/End: Complemental strand, 30442743 - 30442669
Alignment:
Q  85 gtaatgaataatatcggaactttgttagcttctccatttttaatgtcccgggcgttagcatgagtaaaagtccta 159  Q
    |||||||||||||||||||| || ||| ||| |||||||||||||||||||||||||||| | |||| |||||||    
T  30442743 gtaatgaataatatcggaacatttttaacttttccatttttaatgtcccgggcgttagcacgggtaatagtccta 30442669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 85 - 159
Target Start/End: Complemental strand, 22002899 - 22002825
Alignment:
Q  85 gtaatgaataatatcggaactttgttagcttctccatttttaatgtcccgggcgttagcatgagtaaaagtccta 159  Q
    |||||||||||| || ||||||| ||||||| ||||||||||||||||| ||||||| || | ||||||||||||    
T  22002899 gtaatgaataatgtcagaacttttttagcttttccatttttaatgtcccaggcgttaacacgggtaaaagtccta 22002825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 13424802 - 13424758
Alignment:
Q  168 caattgagataaatgaaagtaatatttttagtacatatttgatca 212  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||    
T  13424802 caattgaaataaatgaaaataatatttttagtacatatttgatca 13424758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 154
Target Start/End: Original strand, 36971121 - 36971190
Alignment:
Q  85 gtaatgaataatatcggaactttgttagcttctccatttttaatgtcccgggcgttagcatgagtaaaag 154  Q
    |||||||||||  | |||||||| ||| |||||||||||||||| ||||||||| ||||| | |||||||    
T  36971121 gtaatgaataaatttggaacttttttaacttctccatttttaatatcccgggcggtagcacgggtaaaag 36971190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 144
Target Start/End: Complemental strand, 22004623 - 22004588
Alignment:
Q  109 ttagcttctccatttttaatgtcccgggcgttagca 144  Q
    |||||||||||||||||||||||||||||| |||||    
T  22004623 ttagcttctccatttttaatgtcccgggcggtagca 22004588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 16341580 - 16341536
Alignment:
Q  168 caattgagataaatgaaagtaatatttttagtacatatttgatca 212  Q
    ||||||||||| ||||||   ||||||||||||||||||||||||    
T  16341580 caattgagatagatgaaaaacatatttttagtacatatttgatca 16341536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 9e-23; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 85 - 159
Target Start/End: Original strand, 1264876 - 1264950
Alignment:
Q  85 gtaatgaataatatcggaactttgttagcttctccatttttaatgtcccgggcgttagcatgagtaaaagtccta 159  Q
    ||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||| | ||||||||||||    
T  1264876 gtaatgaataatatcggaatttttttagcttcttcatttttaatgtcccgggcgttagcacgggtaaaagtccta 1264950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 85 - 159
Target Start/End: Complemental strand, 48847062 - 48846988
Alignment:
Q  85 gtaatgaataatatcggaactttgttagcttctccatttttaatgtcccgggcgttagcatgagtaaaagtccta 159  Q
    ||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||| | ||||||||||||    
T  48847062 gtaatgaataatatcggaatttttttagcttcttcatttttaatgtcccgggcgttagcacgggtaaaagtccta 48846988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 89 - 159
Target Start/End: Complemental strand, 26906610 - 26906540
Alignment:
Q  89 tgaataatatcggaactttgttagcttctccatttttaatgtcccgggcgttagcatgagtaaaagtccta 159  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||| | ||||||||||||    
T  26906610 tgaataatatcggaacttttttaccttctccatttttaatgtcccgggcggtagcacgggtaaaagtccta 26906540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 43070313 - 43070259
Alignment:
Q  1 ttataaggagatattcgaaaatgtgtgacccaatattttgtatgctcttaaatac 55  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  43070313 ttataaggagatattcgaaaatgtgtgacccaatattttgtattctcttaaatac 43070259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 85 - 141
Target Start/End: Complemental strand, 43070229 - 43070173
Alignment:
Q  85 gtaatgaataatatcggaactttgttagcttctccatttttaatgtcccgggcgtta 141  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  43070229 gtaatgaataatatcggaacttttttagcttctccatttttaatgtcccggacgtta 43070173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 14232069 - 14232123
Alignment:
Q  1 ttataaggagatattcgaaaatgtgtgacccaatattttgtatgctcttaaatac 55  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||||||    
T  14232069 ttataaggagatattcgaaaatgtgtgacccaatattttgtacgcccttaaatac 14232123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 26906698 - 26906644
Alignment:
Q  1 ttataaggagatattcgaaaatgtgtgacccaatattttgtatgctcttaaatac 55  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||    
T  26906698 ttataaggagatattcgaaaatgtgtgactcaatattttatatgcccttaaatac 26906644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 85 - 159
Target Start/End: Original strand, 14237167 - 14237241
Alignment:
Q  85 gtaatgaataatatcggaactttgttagcttctccatttttaatgtcccgggcgttagcatgagtaaaagtccta 159  Q
    ||||||| ||||||||||| ||| ||| ||| |||||||||||||||||| ||||||||| | |||| |||||||    
T  14237167 gtaatgactaatatcggaatttttttaacttttccatttttaatgtcccgagcgttagcacgggtaatagtccta 14237241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 1264792 - 1264846
Alignment:
Q  1 ttataaggagatattcgaaaatgtgtgacccaatattttgtatgctcttaaatac 55  Q
    ||||||| | |||||||||||||||||||||||||||||||| |  |||||||||    
T  1264792 ttataagaaaatattcgaaaatgtgtgacccaatattttgtaagaccttaaatac 1264846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 48847135 - 48847092
Alignment:
Q  12 tattcgaaaatgtgtgacccaatattttgtatgctcttaaatac 55  Q
    ||||||||||||||||||||||||||||||| |  |||||||||    
T  48847135 tattcgaaaatgtgtgacccaatattttgtagggccttaaatac 48847092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 9e-23; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 85 - 159
Target Start/End: Complemental strand, 31891329 - 31891255
Alignment:
Q  85 gtaatgaataatatcggaactttgttagcttctccatttttaatgtcccgggcgttagcatgagtaaaagtccta 159  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||| | ||||||||||||    
T  31891329 gtaatgaataatatcggaacttttttagcttcttcatttttaatgtcccgggcattagcacgggtaaaagtccta 31891255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 31891413 - 31891360
Alignment:
Q  1 ttataaggagatattcgaaaatgtgtgacccaatattttgtatgctcttaaata 54  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||    
T  31891413 ttataaggaaatattcgaaaatgtgtgacccaatattttatatgcccttaaata 31891360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 21999295 - 21999241
Alignment:
Q  1 ttataaggagatattcgaaaatgtgtgacccaatattttgtatgctcttaaatac 55  Q
    ||||||||| |||||| |||||||| ||||||||||||||||||| |||||||||    
T  21999295 ttataaggaaatattcaaaaatgtgcgacccaatattttgtatgcccttaaatac 21999241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 109 - 159
Target Start/End: Complemental strand, 33043192 - 33043142
Alignment:
Q  109 ttagcttctccatttttaatgtcccgggcgttagcatgagtaaaagtccta 159  Q
    ||||||||||||||||||||||| |||||||||||| | | ||||||||||    
T  33043192 ttagcttctccatttttaatgtctcgggcgttagcacgggcaaaagtccta 33043142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 144
Target Start/End: Complemental strand, 21999208 - 21999151
Alignment:
Q  87 aatgaataatatcggaactttgttagcttctccatttttaatgtcccgggcgttagca 144  Q
    |||||||||||| |||||||| |||| || | ||||||||||||||||| ||||||||    
T  21999208 aatgaataatattggaacttttttaggtttttcatttttaatgtcccggacgttagca 21999151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 32296367 - 32296411
Alignment:
Q  168 caattgagataaatgaaagtaatatttttagtacatatttgatca 212  Q
    ||||||||||| |||||| | ||||||||||||||||||||||||    
T  32296367 caattgagatagatgaaaatcatatttttagtacatatttgatca 32296411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 159
Target Start/End: Complemental strand, 2918421 - 2918375
Alignment:
Q  113 cttctccatttttaatgtcccgggcgttagcatgagtaaaagtccta 159  Q
    |||||||||||||||||||||||||| ||||| | ||||||| ||||    
T  2918421 cttctccatttttaatgtcccgggcggtagcacgggtaaaagaccta 2918375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 5e-21; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 85 - 160
Target Start/End: Original strand, 25226923 - 25226998
Alignment:
Q  85 gtaatgaataatatcggaactttgttagcttctccatttttaatgtcccgggcgttagcatgagtaaaagtcctaa 160  Q
    ||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||| | |||| ||||||||    
T  25226923 gtaatgaataatatcggaacttttttaacttttccatttttaatgtcccgggcgttagcacgggtaatagtcctaa 25226998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 25226839 - 25226893
Alignment:
Q  1 ttataaggagatattcgaaaatgtgtgacccaatattttgtatgctcttaaatac 55  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  25226839 ttataaggagatattcgaaaatgtgtgacccaatattttgtatgcccttaaatac 25226893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 32617735 - 32617691
Alignment:
Q  168 caattgagataaatgaaagtaatatttttagtacatatttgatca 212  Q
    ||||||||||| |||||| | ||||||||||||||||||||||||    
T  32617735 caattgagatagatgaaaatcatatttttagtacatatttgatca 32617691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 85 - 159
Target Start/End: Original strand, 37225 - 37299
Alignment:
Q  85 gtaatgaataatatcggaactttgttagcttctccatttttaatgtcccgggcgttagcatgagtaaaagtccta 159  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||| | |||| |||||||    
T  37225 gtaatgaataatatcggaacttttttagcttcttcatttttaatgtcccgggtgttagcacgggtaacagtccta 37299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 37141 - 37185
Alignment:
Q  1 ttataaggagatattcgaaaatgtgtgacccaatattttgtatgc 45  Q
    ||||||||| |||||||||||||||||||||||||||||||||||    
T  37141 ttataaggaaatattcgaaaatgtgtgacccaatattttgtatgc 37185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 85 - 159
Target Start/End: Complemental strand, 29861314 - 29861240
Alignment:
Q  85 gtaatgaataatatcggaactttgttagcttctccatttttaatgtcccgggcgttagcatgagtaaaagtccta 159  Q
    ||||||||||||||||||||||| ||||||||| | |||||||||||||| ||||||||| | ||||||||||||    
T  29861314 gtaatgaataatatcggaacttttttagcttcttcgtttttaatgtcccgagcgttagcacgggtaaaagtccta 29861240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 85 - 160
Target Start/End: Original strand, 48289900 - 48289975
Alignment:
Q  85 gtaatgaataatatcggaactttgttagcttctccatttttaatgtcccgggcgttagcatgagtaaaagtcctaa 160  Q
    ||||||||||||||| ||| ||| ||||||||||||||||||||||||||| ||||| || | |||||||||||||    
T  48289900 gtaatgaataatatcagaatttttttagcttctccatttttaatgtcccggacgttaacacgggtaaaagtcctaa 48289975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 29861398 - 29861354
Alignment:
Q  1 ttataaggagatattcgaaaatgtgtgacccaatattttgtatgc 45  Q
    ||||||||| |||||||||||||||||||||||||||||||||||    
T  29861398 ttataaggaaatattcgaaaatgtgtgacccaatattttgtatgc 29861354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 154
Target Start/End: Complemental strand, 32584967 - 32584898
Alignment:
Q  85 gtaatgaataatatcggaactttgttagcttctccatttttaatgtcccgggcgttagcatgagtaaaag 154  Q
    |||||||||||  | |||| ||| ||| |||||| ||||||||||||||||||| ||||| |||||||||    
T  32584967 gtaatgaataaatttggaatttttttaacttctcaatttttaatgtcccgggcggtagcacgagtaaaag 32584898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 28146986 - 28147030
Alignment:
Q  168 caattgagataaatgaaagtaatatttttagtacatatttgatca 212  Q
    ||||||||||| |||||| | ||||||||||||||||||||||||    
T  28146986 caattgagatagatgaaaatcatatttttagtacatatttgatca 28147030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 11440592 - 11440636
Alignment:
Q  168 caattgagataaatgaaagtaatatttttagtacatatttgatca 212  Q
    ||||| ||||| |||||| | ||||||||||||||||||||||||    
T  11440592 caattaagatagatgaaaatcatatttttagtacatatttgatca 11440636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 55606412 - 55606368
Alignment:
Q  168 caattgagataaatgaaagtaatatttttagtacatatttgatca 212  Q
    ||||||| ||| |||||| | ||||||||||||||||||||||||    
T  55606412 caattgatatagatgaaaattatatttttagtacatatttgatca 55606368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 85 - 159
Target Start/End: Complemental strand, 10162 - 10088
Alignment:
Q  85 gtaatgaataatatcggaactttgttagcttctccatttttaatgtcccgggcgttagcatgagtaaaagtccta 159  Q
    ||||||||||||||| |||| || |||| |||||||||||||||||||| |||| ||||| | ||||||| ||||    
T  10162 gtaatgaataatatcagaacatttttagtttctccatttttaatgtcccaggcgatagcacgggtaaaagaccta 10088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 10245 - 10192
Alignment:
Q  1 ttataaggagatattcgaaaatgtgtgacccaatattttgtatgctcttaaatac 55  Q
    ||||||||||||||||||||||||||||||||||| |||||| || |||||||||    
T  10245 ttataaggagatattcgaaaatgtgtgacccaata-tttgtacgcccttaaatac 10192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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