View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1429_low_63 (Length: 207)
Name: NF1429_low_63
Description: NF1429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1429_low_63 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 17 - 189
Target Start/End: Original strand, 13695951 - 13696123
Alignment:
| Q |
17 |
aatatgtaccaatgtttatgtcggcaaaagttacactttagagtttctacaaaatcacaaatttattttgatttcgccagattttgtacttatcttacaa |
116 |
Q |
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| T |
13695951 |
aatatgtaccaatgtttatgttggcaaaagttacactttggagtttctacaaaatcacaaatttattttgatttcgccagattttgtacttatcttacaa |
13696050 |
T |
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| Q |
117 |
actaacctcagagacaagcttgaatgcaatttcagccttgggatgtttattcttatctggatgaagttgcaag |
189 |
Q |
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| T |
13696051 |
actaacctcagagacaagcttgaatgcaatttcagccttgggatgtttattcttatctggatgaagttgcaag |
13696123 |
T |
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Target: chr4 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 115 - 185
Target Start/End: Complemental strand, 49928698 - 49928628
Alignment:
| Q |
115 |
aaactaacctcagagacaagcttgaatgcaatttcagccttgggatgtttattcttatctggatgaagttg |
185 |
Q |
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|||||||||||||| ||||| ||||| ||||||||||| || |||||||| |||||||||||||||||||| |
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| T |
49928698 |
aaactaacctcagaaacaagtttgaaggcaatttcagcttttggatgtttgttcttatctggatgaagttg |
49928628 |
T |
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