View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1429_low_8 (Length: 551)
Name: NF1429_low_8
Description: NF1429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1429_low_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 89 - 537
Target Start/End: Complemental strand, 36886036 - 36885588
Alignment:
| Q |
89 |
catagatatgtactcctctttattgctatattttattgaagacacaaaagttgaaaagcacctgagaaaggcatcgattataaaaatataatattttgta |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36886036 |
catagatatgtactcctctttattgctatattttattgaagacacaaaagttgaaaagcacctgagaaaggcatcgattataaaaatataatattttgta |
36885937 |
T |
|
| Q |
189 |
tgtttcactgatttaaagggatgtgataagactgtgtaatgaaaattggatctgactaggttttgagaaaatgatattaacaaaatgcagatgctctgac |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
36885936 |
tgtttcactgatttaaagggatgtgataagactgtgtaatgaaaattggatctgactaggttttgagaaaatgatattcacaaaatgcagatgctctgac |
36885837 |
T |
|
| Q |
289 |
tgttttgttcaaatttcattaaatggaacctcacaacgggtgatttcctttcttcagggacctttcgtacaataacttctcaggagatctaccaagatca |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36885836 |
tgttttgttcaaatttcattaaatggaacctcacaacgggtgatttcctttcttcagggacatttcgtacaataacttctcaggagatctaccaagatca |
36885737 |
T |
|
| Q |
389 |
tttggttccttgacaaaccttgccagactgtaaatttcttccttcctatgtcttattttcgctaaacttgatttacgtatcattgtatactcaattttga |
488 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36885736 |
tttggttccttgacaaaccttgccagactgtaaatttcttccttcctatgtcttattttcgctaaacttgatttacgtatcattgtatactcaattttga |
36885637 |
T |
|
| Q |
489 |
aaggaagaacttttgtttataggggtctgttggtttgatctgaaaattg |
537 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36885636 |
aaggaagaacttttgtttataggggtctgttggtttgatctgaaaattg |
36885588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 337 - 429
Target Start/End: Complemental strand, 22556284 - 22556192
Alignment:
| Q |
337 |
tttcttcagggacctttcgtacaataacttctcaggagatctaccaagatcatttggttccttgacaaaccttgccagactgtaaatttcttc |
429 |
Q |
| |
|
|||| ||||||||||||| || ||||| ||| | |||||||| ||||| |||||||||||||||| |||||||| ||| ||||| ||||||| |
|
|
| T |
22556284 |
tttcatcagggacctttcttataataatttcactggagatctgccaagttcatttggttccttgataaaccttgatagattgtaagtttcttc |
22556192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University