View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14300_high_11 (Length: 505)
Name: NF14300_high_11
Description: NF14300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14300_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 15 - 284
Target Start/End: Complemental strand, 38517344 - 38517064
Alignment:
| Q |
15 |
aacaagaacatgttagaaaattagaaaa-gatgtaatcataattaacttcaaatacaatctattttcttgttcacaaacgaacccagcttctacaaaaac |
113 |
Q |
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| T |
38517344 |
aacaagaacatgttagaaaattagaaaaagatgtaatcataattaacttcaaatacaatctattttcttgttcacaaacgaacccagcttctacaaaaac |
38517245 |
T |
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| Q |
114 |
tataaagaaccaaagaaaat-aaagaaagactaaccaagataannnnnnngacataagattaacaag---------ataataataaaagagagaaaccca |
203 |
Q |
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| T |
38517244 |
tataaagaaccaaagaaaataaaaaaaagactaaccaagataatttttttgacataagattaacaagataataataataataataaaagagagaaaccca |
38517145 |
T |
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| Q |
204 |
atttatttaattacaaatccctaattggatccattcttagccaatcttggtgaagctctaaccctagtcacagaattaggg |
284 |
Q |
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| T |
38517144 |
atttatttaattacaaatccctaattggaaccattcttagccaatcttggtgaaactctaaccctagtcacagaattaggg |
38517064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 340 - 492
Target Start/End: Complemental strand, 38517005 - 38516853
Alignment:
| Q |
340 |
cagcatcgccaattttcaccaatctccgactcctcttcactggtggagtcaccggctccggatcagcaactgccggcgctacctcagcagatcggtcatt |
439 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
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| T |
38517005 |
cagcatcgccaattttcaccaatctccgactcctcttcactggtggagtcaccggcgccggatcagcaactaccggcgctacctcagcagatcggtcatt |
38516906 |
T |
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| Q |
440 |
cactggagaagcaactcgatcaaaatcatcaccaagcttcttgaccaaccttc |
492 |
Q |
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||| ||||||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
38516905 |
caccggagaagcaactcgatcaaaatcatcaccaagcctcttcaccaaccttc |
38516853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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