View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14300_high_13 (Length: 454)
Name: NF14300_high_13
Description: NF14300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14300_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 12 - 261
Target Start/End: Original strand, 8021453 - 8021704
Alignment:
| Q |
12 |
agagactagatgagggttaccaaatatacttttattgcacatgttattacaatcnnnnnnnnn--acattatgatattttttggttacacatgttgttag |
109 |
Q |
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| T |
8021453 |
agagactagatgagggttaccgaatatacttttattgcacatgttattacaatcttttttttgttacattatgatattttttggttacacatgttgttag |
8021552 |
T |
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| Q |
110 |
aatcttatataatgcatcacaagaaaaaagaaatcttacgtaatgcaattagaaactcaagggattcgnnnnnnnntcttacataatccaattaaaaact |
209 |
Q |
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| T |
8021553 |
aatcttatataatgcatcacaagaaaaaagaaatcttacgtaatgcaattagaaactcaagggattcgaaaaaaaatcttacataatccaattaaaaact |
8021652 |
T |
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| Q |
210 |
aaaattagcttctaactaacttcaaagagcttcaagtctacaatgaagtgta |
261 |
Q |
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| T |
8021653 |
aaaattagcttctaactaacttcaaagagcttcaagtctacaatgaagtgta |
8021704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 303 - 440
Target Start/End: Original strand, 8021745 - 8021883
Alignment:
| Q |
303 |
ggtcaagaaggaatacgtactcgtttatataataaatatannnnnnngatcaagatatttttaaatttttacggacgtttatattataagtggactca-t |
401 |
Q |
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| T |
8021745 |
ggtcaagaaggaatacgtactcgtttatataataaatatatatttttgatcaagatattattaaatttttacggacgtttatattataagtggactcatt |
8021844 |
T |
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| Q |
402 |
ttaatgtttgttcccaccgtcctttgattagtgatactt |
440 |
Q |
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| T |
8021845 |
ttaatatttgttcccaccgtcctttgattagtgatactt |
8021883 |
T |
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