View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14300_high_14 (Length: 450)
Name: NF14300_high_14
Description: NF14300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14300_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Complemental strand, 37175076 - 37174650
Alignment:
| Q |
1 |
tatagcctttttgatgtgcgcgtgttgannnnnnnnnaatactatggttgagggaaataattgtgtagttgaaaaataaataaaaagtgatgtaacataa |
100 |
Q |
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| T |
37175076 |
tatagcctttttgatgtgcgcgtgttgatttttttt-aatactatggttgagggacataattgtgtagttgaaaaataaataaaaagtgatgtaccataa |
37174978 |
T |
|
| Q |
101 |
actattgggtaatggatataattaattcataaacacaacacaaatattgaaattactcaagaaaaaattgcagatctagaacttttgaggaggaggatgt |
200 |
Q |
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| T |
37174977 |
actattgggtaatggatataattaattcataaacacaacacaaatattgaaattactcaagaaaaaattgcagatctagaacttttgaggaggaggatgt |
37174878 |
T |
|
| Q |
201 |
aagaaatcatgctcattttatatttggaagcctatcattcaacaatcttgtgataattaatagactttgttttatgatttgtagatgtgatcattaagag |
300 |
Q |
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| T |
37174877 |
aagaaatcatcctcattttatatttggaagcctatcattcaacaatcttgtgataattaatagactttgttttatgatttgtagatgtgattattaagag |
37174778 |
T |
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| Q |
301 |
cacatgttaggtactgaggaattgtgaataatcattacttaaggaaatgaaaatatgttaaattgctagaaaatatattcaattggcaatggtattgatg |
400 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
37174777 |
cacatgttaggtactgaggaattgtgaataatcaatacttaaggaaatgaaaatatgctaaattgctagaaaatatattcaattggcaatggtattgatg |
37174678 |
T |
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| Q |
401 |
agtaatctatgatgaccacatgactaac |
428 |
Q |
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| T |
37174677 |
agtaatctatgatggccacatgactaac |
37174650 |
T |
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