View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14300_high_2 (Length: 738)

Name: NF14300_high_2
Description: NF14300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14300_high_2
NF14300_high_2
[»] chr3 (4 HSPs)
chr3 (8-674)||(39336774-39337440)
chr3 (672-723)||(39338384-39338432)
chr3 (15-71)||(43838490-43838546)
chr3 (15-71)||(47944547-47944603)
[»] chr2 (4 HSPs)
chr2 (6-71)||(6788475-6788540)
chr2 (11-73)||(19206496-19206558)
chr2 (13-63)||(20966212-20966262)
chr2 (14-67)||(2686986-2687038)
[»] chr7 (3 HSPs)
chr7 (15-73)||(8929501-8929559)
chr7 (16-71)||(23474559-23474614)
chr7 (16-62)||(23532906-23532952)
[»] chr4 (6 HSPs)
chr4 (15-73)||(7616951-7617009)
chr4 (23-73)||(39331171-39331221)
chr4 (16-71)||(32123827-32123882)
chr4 (16-71)||(32934139-32934194)
chr4 (12-62)||(23716604-23716654)
chr4 (11-73)||(40836891-40836953)
[»] scaffold0687 (1 HSPs)
scaffold0687 (12-71)||(1629-1688)
[»] chr8 (3 HSPs)
chr8 (12-71)||(7603945-7604004)
chr8 (16-73)||(4586800-4586857)
chr8 (39-103)||(6915537-6915599)
[»] chr6 (4 HSPs)
chr6 (14-73)||(25085082-25085141)
chr6 (39-73)||(30000002-30000036)
chr6 (39-73)||(31315304-31315338)
chr6 (39-72)||(9762635-9762668)
[»] chr5 (2 HSPs)
chr5 (11-73)||(42525235-42525297)
chr5 (12-68)||(37853448-37853504)
[»] chr1 (5 HSPs)
chr1 (15-71)||(51849552-51849608)
chr1 (11-73)||(31415048-31415110)
chr1 (23-68)||(10018971-10019016)
chr1 (39-68)||(45679559-45679588)
chr1 (15-72)||(45679736-45679793)
[»] scaffold0050 (1 HSPs)
scaffold0050 (15-69)||(81349-81403)


Alignment Details
Target: chr3 (Bit Score: 627; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 627; E-Value: 0
Query Start/End: Original strand, 8 - 674
Target Start/End: Original strand, 39336774 - 39337440
Alignment:
8 cagcagagactattctgactaacgaagtccgcaatcaaaaactattttaaaattttaatacattaattggacttttgtgcttagtcattacacattcaaa 107  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||    
39336774 cagcagagattattctgactaacgaagtccgcaatcaaaaactattttaaaattttaatatattaattggacttttgtggttagtaattacacattcaaa 39336873  T
108 gatcaaaagtgactgttactccaatttataactattgatgtgataataaaagctatagaaataataaattgaaaacagaaaataatattcatatgatatt 207  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
39336874 gatcaaaagtgacggttactccaatttataactattgatgtgataataaaagatatagaaataataaattgaaaacagaaaataatattcatatgatatt 39336973  T
208 tatttatagagttttggacaacaaaagatttctagataacatttctccatatatcacttttaacacatttaccataaaataatattttatgaaaatttgc 307  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
39336974 tatttatagagttttagacaacaaaaaatttctagataacatttctccatatatcacttttaacacatttcccataaaataatattttatgaaaatttgc 39337073  T
308 gatcaagacccccacatcacatggcacatgttctgttttcacacacaactgatgagaagagaacagtgacttttcatgagttaaatttgtagtactctta 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
39337074 gatcaagacccccacatcacatggcacatgttctgttttcacacacaactgatgagaagagaacagtgacttttcatgagttaaatttgtagtactctta 39337173  T
408 cttttataactatgatgatgatgagcccacctcacacgtgtttttgtcgttttagaaaaattgggtcccatttgtattgtttaactttgtcagtgggctc 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
39337174 cttttataactatgatgatgatgagcccacctcacacgtgtttttgtcgttttagaaaaattgggtcccatttgtattgtttaactttgtcagtgggctc 39337273  T
508 caccagtcagtgatgacgagtaatgggtcctacttttatgctgaatctgtctttccctcccatccatgcctgcctgtcactggtcggcatctgtttcaga 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
39337274 caccagtcagtgatgacgagtaatgggtcctacttttatgctgaatctgtctttccctcccatccatgcctgcctgtcactggtcggcatctgtttcaga 39337373  T
608 aaagacctcgttgaattgagcacatacacatctatctagcttaacattgttataaatgataaattag 674  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
39337374 aaagaccttgttgaattgagcacatacacatctatctagcttaacattgttataaatgataaattag 39337440  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 672 - 723
Target Start/End: Original strand, 39338384 - 39338432
Alignment:
672 tagtttcttgctaagtagtagtaatagatttgttaattcatattaaaaaatt 723  Q
    |||||||||||||||||   ||||||||||||||||||||||||||||||||    
39338384 tagtttcttgctaagta---gtaatagatttgttaattcatattaaaaaatt 39338432  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 43838546 - 43838490
Alignment:
15 gactattctgactaacgaagtccgcaatcaaaaactattttaaaattttaatacatt 71  Q
    ||||||| |||||||| |||| |  ||||||| ||||||||||||||||||||||||    
43838546 gactattatgactaacaaagtacaaaatcaaagactattttaaaattttaatacatt 43838490  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 47944547 - 47944603
Alignment:
15 gactattctgactaacgaagtccgcaatcaaaaactattttaaaattttaatacatt 71  Q
    ||||||| ||| ||||||||| | |||||||| ||||||||||||||| ||||||||    
47944547 gactattttgattaacgaagtgcacaatcaaagactattttaaaatttcaatacatt 47944603  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 71
Target Start/End: Original strand, 6788475 - 6788540
Alignment:
6 agcagcagagactattctgactaacgaagtccgcaatcaaaaactattttaaaattttaatacatt 71  Q
    |||| |||||||||||||||||||| |||| | |||||| |||||||||||||||||| |||||||    
6788475 agcatcagagactattctgactaacaaagtgcacaatcagaaactattttaaaattttgatacatt 6788540  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 19206496 - 19206558
Alignment:
11 cagagactattctgactaacgaagtccgcaatcaaaaactattttaaaattttaatacattaa 73  Q
    |||||| |||| |||||||| |||| |  ||||| |||||||||||||||||| |||||||||    
19206496 cagagaatattttgactaacaaagtgcataatcagaaactattttaaaattttgatacattaa 19206558  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 20966212 - 20966262
Alignment:
13 gagactattctgactaacgaagtccgcaatcaaaaactattttaaaatttt 63  Q
    ||||||||| |||||||| |||| | |||||||| ||||||||||||||||    
20966212 gagactattttgactaacaaagtgcacaatcaaagactattttaaaatttt 20966262  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 2687038 - 2686986
Alignment:
14 agactattctgactaacgaagtccgcaatcaaaaactattttaaaattttaata 67  Q
    |||||||| ||||||||||||| ||||||| ||||||||| |||||||| ||||    
2687038 agactatt-tgactaacgaagtgcgcaatcgaaaactattataaaatttgaata 2686986  T

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Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 8929559 - 8929501
Alignment:
15 gactattctgactaacgaagtccgcaatcaaaaactattttaaaattttaatacattaa 73  Q
    ||||||| |||||||| |||| |  ||||||||||||||||||||||||||||||||||    
8929559 gactattttgactaacaaagtgcaaaatcaaaaactattttaaaattttaatacattaa 8929501  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 23474614 - 23474559
Alignment:
16 actattctgactaacgaagtccgcaatcaaaaactattttaaaattttaatacatt 71  Q
    |||||| ||| ||||||||| | ||||||| ||||||||||||||||| |||||||    
23474614 actattttgattaacgaagtgcacaatcaataactattttaaaattttgatacatt 23474559  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 23532952 - 23532906
Alignment:
16 actattctgactaacgaagtccgcaatcaaaaactattttaaaattt 62  Q
    |||||| ||| ||||||||||| ||||||| ||||||||||||||||    
23532952 actattttgattaacgaagtccacaatcaataactattttaaaattt 23532906  T

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Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 7616951 - 7617009
Alignment:
15 gactattctgactaacgaagtccgcaatcaaaaactattttaaaattttaatacattaa 73  Q
    ||||||| |||||||| |||| |  ||||||||||||||||||||||||||||||||||    
7616951 gactattttgactaacaaagtgcaaaatcaaaaactattttaaaattttaatacattaa 7617009  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 73
Target Start/End: Original strand, 39331171 - 39331221
Alignment:
23 tgactaacgaagtccgcaatcaaaaactattttaaaattttaatacattaa 73  Q
    |||| |||||||| | |||||||||||||||||||||||| ||||||||||    
39331171 tgacaaacgaagtgcacaatcaaaaactattttaaaatttcaatacattaa 39331221  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 32123882 - 32123827
Alignment:
16 actattctgactaacgaagtccgcaatcaaaaactattttaaaattttaatacatt 71  Q
    |||||| | ||||||||||| |  ||||||| ||||||||||||||||||||||||    
32123882 actattttaactaacgaagtacaaaatcaaagactattttaaaattttaatacatt 32123827  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 32934139 - 32934194
Alignment:
16 actattctgactaacgaagtccgcaatcaaaaactattttaaaattttaatacatt 71  Q
    |||||| |||||| | |||| | ||||||||||||||||||||||||| |||||||    
32934139 actattttgactagcaaagtgcacaatcaaaaactattttaaaattttgatacatt 32934194  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 23716654 - 23716604
Alignment:
12 agagactattctgactaacgaagtccgcaatcaaaaactattttaaaattt 62  Q
    |||||||||| | ||||||  ||| ||||||||||||||||||||||||||    
23716654 agagactattttaactaacagagtgcgcaatcaaaaactattttaaaattt 23716604  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 40836891 - 40836953
Alignment:
11 cagagactattctgactaacgaagtccgcaatcaaaaactattttaaaattttaatacattaa 73  Q
    ||||||||||| ||||||||   || | |||||||  ||||||||||||||||||||||||||    
40836891 cagagactattttgactaacacggtacacaatcaatgactattttaaaattttaatacattaa 40836953  T

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Target: scaffold0687 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0687
Description:

Target: scaffold0687; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 1688 - 1629
Alignment:
12 agagactattctgactaacgaagtccgcaatcaaaaactattttaaaattttaatacatt 71  Q
    |||||||||| |||| |||||||| | |||||||||| |||||||||||||| |||||||    
1688 agagactattttgaccaacgaagtgcacaatcaaaaattattttaaaattttgatacatt 1629  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 7604004 - 7603945
Alignment:
12 agagactattctgactaacgaagtccgcaatcaaaaactattttaaaattttaatacatt 71  Q
    |||||||||| |||| |||||||| | |||||||||| |||||||||||||| |||||||    
7604004 agagactattttgaccaacgaagtgcacaatcaaaaattattttaaaattttgatacatt 7603945  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 4586857 - 4586800
Alignment:
16 actattctgactaacgaagtccgcaatcaaaaactattttaaaattttaatacattaa 73  Q
    |||||| ||||||||||||| |  ||||| | ||||||||||||||||||||||||||    
4586857 actattttgactaacgaagtgcaaaatcatagactattttaaaattttaatacattaa 4586800  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 6915537 - 6915599
Alignment:
39 caatcaaaaactattttaaaattttaatacattaattggacttttgtgcttagtcattacacatt 103  Q
    |||||||||| |||||||||||||| |||||||||  ||||| ||||| ||| | ||||||||||    
6915537 caatcaaaaattattttaaaattttgatacattaa--ggactattgtgattacttattacacatt 6915599  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000007; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 25085082 - 25085141
Alignment:
14 agactattctgactaacgaagtccgcaatcaaaaactattttaaaattttaatacattaa 73  Q
    |||||||| |||||||| |||| | |||||||||| |||||||||||||| |||||||||    
25085082 agactattttgactaacaaagtgcacaatcaaaaagtattttaaaattttgatacattaa 25085141  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 73
Target Start/End: Original strand, 30000002 - 30000036
Alignment:
39 caatcaaaaactattttaaaattttaatacattaa 73  Q
    |||||||||||||||||||||||||||||| ||||    
30000002 caatcaaaaactattttaaaattttaataccttaa 30000036  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 73
Target Start/End: Original strand, 31315304 - 31315338
Alignment:
39 caatcaaaaactattttaaaattttaatacattaa 73  Q
    |||||||| ||||||||||||||||||||||||||    
31315304 caatcaaagactattttaaaattttaatacattaa 31315338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 72
Target Start/End: Original strand, 9762635 - 9762668
Alignment:
39 caatcaaaaactattttaaaattttaatacatta 72  Q
    ||||||||||||||||||||||||| ||||||||    
9762635 caatcaaaaactattttaaaattttgatacatta 9762668  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 42525297 - 42525235
Alignment:
11 cagagactattctgactaacgaagtccgcaatcaaaaactattttaaaattttaatacattaa 73  Q
    |||| |||||| ||||||| ||||||| |||||||||| |||||||||||| | |||||||||    
42525297 cagaaactattttgactaatgaagtccacaatcaaaaattattttaaaattatgatacattaa 42525235  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 37853448 - 37853504
Alignment:
12 agagactattctgactaacgaagtccgcaatcaaaaactattttaaaattttaatac 68  Q
    |||||||||| |||||||| ||||   |||| |||||||||||||||||||||||||    
37853448 agagactattttgactaacaaagtatacaattaaaaactattttaaaattttaatac 37853504  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 51849552 - 51849608
Alignment:
15 gactattctgactaacgaagtccgcaatcaaaaactattttaaaattttaatacatt 71  Q
    ||||||| ||||||| |||||   |||||| ||||||||||||||||||||||||||    
51849552 gactattttgactaaagaagtgtacaatcacaaactattttaaaattttaatacatt 51849608  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 31415048 - 31415110
Alignment:
11 cagagactattctgactaacgaagtccgcaatcaaaaactattttaaaattttaatacattaa 73  Q
    ||||||||||| | || || ||||| | |||||||| ||||||||||||||| ||||||||||    
31415048 cagagactattttaaccaatgaagtacacaatcaaatactattttaaaatttaaatacattaa 31415110  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 10018971 - 10019016
Alignment:
23 tgactaacgaagtccgcaatcaaaaactattttaaaattttaatac 68  Q
    ||||||| ||||| | ||||||||||||||||||||||||| ||||    
10018971 tgactaaagaagtacacaatcaaaaactattttaaaatttttatac 10019016  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 68
Target Start/End: Complemental strand, 45679588 - 45679559
Alignment:
39 caatcaaaaactattttaaaattttaatac 68  Q
    ||||||||||||||||||||||||||||||    
45679588 caatcaaaaactattttaaaattttaatac 45679559  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 45679736 - 45679793
Alignment:
15 gactattctgactaacgaagtccgcaatcaaaaactattttaaaattttaatacatta 72  Q
    ||||||| ||||||||||| | | ||||||  ||||||||||||||||| ||||||||    
45679736 gactattttgactaacgaattgcacaatcatgaactattttaaaatttttatacatta 45679793  T

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Target: scaffold0050 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 81403 - 81349
Alignment:
15 gactattctgactaacgaagtccgcaatcaaaaactattttaaaattttaataca 69  Q
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81403 gactattttgactaacgaagtgcacaatcataaactattttgaaatttcaataca 81349  T

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