View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14300_high_23 (Length: 366)
Name: NF14300_high_23
Description: NF14300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14300_high_23 |
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Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 42833724 - 42833381
Alignment:
| Q |
1 |
tacttgactttcttaataacagttaaagttcaagcaaaacaagttatctataagcacagggacaccaagtgtaactacatatgtttcggtgtcatgtcgg |
100 |
Q |
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| T |
42833724 |
tacttgactttcttaataacagttcaagttcaagcaaaacgagttatctataagcacagggacaccaagtgtaactgcataagtttcggtgtcatgtcgg |
42833625 |
T |
|
| Q |
101 |
tgtttgacaagtacatgtttggaacactggacacaccttaattcaaaaggtgtcattaacattaactcaaatatttatcaaaattttaaaatcctactgg |
200 |
Q |
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| T |
42833624 |
tgtttgacaagtacatgtttggaacactggacacaccttaattcaaaaagtgtcattaac------tcaaatatttatcaaaattttaaaatcctactgg |
42833531 |
T |
|
| Q |
201 |
ttgaataagtaacattaactaacacgtaaaattgaccatgggactttcttcataacagttcaagttcaagcaaaaagagagttatctatagcgcacaagg |
300 |
Q |
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| T |
42833530 |
ttgaataagtaacattaactaacacgtaaaattgacaatgagactttcttcataacagttcaagttcaggcaaaaagagagttatctatagcgcacaagg |
42833431 |
T |
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| Q |
301 |
ataccgagtgtaactacaatgtttgggtgtcgtgtcggtacttgacaagt |
350 |
Q |
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| T |
42833430 |
acaccgagtgtaactacaatgtttgggtgtcgtgtcggtacttgacaagt |
42833381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 180 - 350
Target Start/End: Complemental strand, 42833781 - 42833613
Alignment:
| Q |
180 |
aaaattttaaaatcctactggttgaataagtaacattaactaacacgtaaaattgaccatgggactttcttcataacagttcaagttcaagcaaaaagag |
279 |
Q |
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| T |
42833781 |
aaaattttaaaattccactagttgaataagtaacattaactaacacgtaaaattgactacttgactttcttaataacagttcaagttcaagcaaaa--cg |
42833684 |
T |
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| Q |
280 |
agttatctatagcgcacaaggataccgagtgtaactaca-atgtttgggtgtcgtgtcggtacttgacaagt |
350 |
Q |
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| T |
42833683 |
agttatctata-agcacagggacaccaagtgtaactgcataagtttcggtgtcatgtcggtgtttgacaagt |
42833613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 149
Target Start/End: Complemental strand, 42833489 - 42833344
Alignment:
| Q |
6 |
gactttcttaataacagttaaagttcaagcaaaacaag--ttatctataa-gcacagggacaccaagtgtaactacatatgtttcggtgtcatgtcggtg |
102 |
Q |
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| T |
42833489 |
gactttcttcataacagttcaagttcaggcaaaaagagagttatctatagcgcacaaggacaccgagtgtaactaca-atgtttgggtgtcgtgtcggta |
42833391 |
T |
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| Q |
103 |
tttgacaagtacatgtttggaacactggacacaccttaattcaaaag |
149 |
Q |
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| T |
42833390 |
cttgacaagtatatgtataaaacatcggacacaccttcaatcaaaag |
42833344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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