View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14300_high_25 (Length: 342)
Name: NF14300_high_25
Description: NF14300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14300_high_25 |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 18 - 340
Target Start/End: Complemental strand, 20259593 - 20259271
Alignment:
| Q |
18 |
aagggtaacttctattcaacacatatcggaacatggtgggtgatggaaatttttcgccttgtctataatgtcgtttctactggttattttgactcaccta |
117 |
Q |
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|||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
20259593 |
aagggtaacttctatttagcacatatcggcacatggtgggtgatggaaatttttcgccttgtctataatgtcgtttctactggttattttgactcgccta |
20259494 |
T |
|
| Q |
118 |
tgtctaaaactctcgtttccttcatccccggagttggaactcccaccatctttaaggaacgtagacctgtaagcctttgcaatattgtctacaaaatcat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
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| T |
20259493 |
tgtctaaaactctcgtttccttcatccccggagttggaactcccaccatctttaaggaacttagacctgtaagcctttgcaacattgtctacaaaatcat |
20259394 |
T |
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| Q |
218 |
tgtcaaagtcatggttaaccggctcttcaacatatttctcacctcttatttgcatatgatgttctcctcttcaacaaggcaaaaaactatcaactcaaat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20259393 |
tgtcaaagtcatggttaaccggctcttcaacatatttctcacctcttatttgcatatgatgttctcctcttcaacaaggcaaaaaactatcaactcaaat |
20259294 |
T |
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| Q |
318 |
tcattactaatccctttgctact |
340 |
Q |
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||||||||||| ||||| |||| |
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| T |
20259293 |
ccattactaatctctttgatact |
20259271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 248 - 303
Target Start/End: Complemental strand, 32874386 - 32874331
Alignment:
| Q |
248 |
catatttctcacctcttatttgcatatgatgttctcctcttcaacaaggcaaaaaa |
303 |
Q |
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||||| |||||||| | |||||||||||||| |||||||||| |||||||||||| |
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| T |
32874386 |
catatatctcaccttctctttgcatatgatgtcctcctcttcaccaaggcaaaaaa |
32874331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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