View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14300_high_27 (Length: 328)

Name: NF14300_high_27
Description: NF14300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14300_high_27
NF14300_high_27
[»] chr7 (14 HSPs)
chr7 (108-317)||(39354318-39354530)
chr7 (113-327)||(39537172-39537389)
chr7 (95-328)||(39366908-39367144)
chr7 (138-326)||(39339510-39339698)
chr7 (140-328)||(39563287-39563477)
chr7 (174-327)||(1083999-1084152)
chr7 (174-322)||(39546637-39546785)
chr7 (198-316)||(39588386-39588504)
chr7 (172-317)||(39573907-39574052)
chr7 (166-316)||(39621241-39621391)
chr7 (10-43)||(39366824-39366857)
chr7 (10-43)||(39563543-39563576)
chr7 (10-43)||(39339398-39339431)
chr7 (10-43)||(39354243-39354276)
[»] chr1 (1 HSPs)
chr1 (195-236)||(2159903-2159944)


Alignment Details
Target: chr7 (Bit Score: 147; Significance: 2e-77; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 108 - 317
Target Start/End: Original strand, 39354318 - 39354530
Alignment:
Q  108 ttgatttcatttttatgctttaaattaatatctt---gttaacatttcaaaacgtacacacttgtcttaaagggaatccaaggtgttacgaagattaaag 204  Q
    ||||||||| |||||||||| |||||| ||||||   ||||||||||||||| ||||||||||||||| |||||||||||||||||||  ||||| ||||    
T  39354318 ttgatttcaattttatgcttcaaattattatcttcttgttaacatttcaaaatgtacacacttgtcttgaagggaatccaaggtgttagaaagatcaaag 39354417  T
Q  205 acggttataatccagcaacgtggatgttggaaatcacaacttcatctaaagaaatagaattggggattgattttgcagagttgtacaaaagttcagagtt 304  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||    
T  39354418 acggttataatccagcaacatggatgttggaagtcacaacttcatctaaagaaagggaattggggattgattttgcagagttgtacaaaaattcagagtt 39354517  T
Q  305 atacaggtatttt 317  Q
    |||||||||||||    
T  39354518 atacaggtatttt 39354530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 113 - 327
Target Start/End: Complemental strand, 39537389 - 39537172
Alignment:
Q  113 ttcatttttatgctttaaattaatatc---ttgttaacatttcaaaacgtacacacttgtcttaaagggaatccaaggtgttacgaagattaaagacggt 209  Q
    |||||||||||||||||||||| ||||   |||| |||||| ||||| ||||| ||||||||| ||||||||  |||||||||  ||||||||| |||||    
T  39537389 ttcatttttatgctttaaattattatcatcttgtgaacattacaaaatgtacatacttgtcttgaagggaataaaaggtgttagcaagattaaatacggt 39537290  T
Q  210 tataatccagcaacgtggatgttggaaatcacaacttcatctaaagaaatagaattggggattgattttgcagagttgtacaaaagttcagagttataca 309  Q
    |||||||||||||| |||||||||||| |||| ||||||||||||||||  |||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  39537289 tataatccagcaacatggatgttggaagtcaccacttcatctaaagaaagggaattggggattgattttgcagaggtgtacaaaaattcagagttataca 39537190  T
Q  310 ggtatttttacttgtatg 327  Q
    |||||||| ||| |||||    
T  39537189 ggtattttcactggtatg 39537172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 95 - 328
Target Start/End: Original strand, 39366908 - 39367144
Alignment:
Q  95 aaagtgtggaattttgatttcatttttatgctttaaattaatatct---tgttaacatttcaaaacgtacacacttgtcttaaagggaatccaaggtgtt 191  Q
    ||||| |||||| ||||||||||||||||| || |||||| |||||   ||||||| ||||| |  ||||||||||||||| |||||| | |||||||||    
T  39366908 aaagtatggaatattgatttcatttttatgtttcaaattattatctacttgttaacgtttcatagtgtacacacttgtcttgaagggagtacaaggtgtt 39367007  T
Q  192 acgaagattaaagacggttataatccagcaacgtggatgttggaaatcacaacttcatctaaagaaatagaattggggattgattttgcagagttgtaca 291  Q
    |  ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||| | || ||  ||||||||| ||||||| ||||||    
T  39367008 agcaagattaaagacggttataatccagcaacatggatgttggaagtcacaacttcatccaaagaagtggagttacggattgattatgcagaggtgtaca 39367107  T
Q  292 aaagttcagagttatacaggtatttttacttgtatga 328  Q
    ||| |||||||||||||||||||||| ||||||||||    
T  39367108 aaaattcagagttatacaggtattttcacttgtatga 39367144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 138 - 326
Target Start/End: Original strand, 39339510 - 39339698
Alignment:
Q  138 tcttgttaacatttcaaaacgtacacacttgtcttaaagggaatccaaggtgttacgaagattaaagacggttataatccagcaacgtggatgttggaaa 237  Q
    |||| |||||||||||||  |||  |||||||| | |||||||||||||||||||  ||||| ||||||||||||||||||||||| ||||||||||||     
T  39339510 tcttcttaacatttcaaactgtaagcacttgtcatgaagggaatccaaggtgttagcaagatcaaagacggttataatccagcaacatggatgttggaag 39339609  T
Q  238 tcacaacttcatctaaagaaatagaattggggattgattttgcagagttgtacaaaagttcagagttatacaggtatttttacttgtat 326  Q
    |||||| ||||||||||||| | ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||| ||||    
T  39339610 tcacaaattcatctaaagaagtggaattggggattgattttgtagagttgtacaaaaattcagagttatacaggtattttcactggtat 39339698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 140 - 328
Target Start/End: Complemental strand, 39563477 - 39563287
Alignment:
Q  140 ttgttaacatttcaaaacgtacacactt--gtcttaaagggaatccaaggtgttacgaagattaaagacggttataatccagcaacgtggatgttggaaa 237  Q
    ||||||||||||| | | ||||||||||  ||||| ||||| ||||| |||||||  ||||||||||||||||||||||||||||| ||||||||||||     
T  39563477 ttgttaacatttcgataagtacacacttttgtcttgaaggggatccatggtgttagcaagattaaagacggttataatccagcaacatggatgttggaag 39563378  T
Q  238 tcacaacttcatctaaagaaatagaattggggattgattttgcagagttgtacaaaagttcagagttatacaggtatttttacttgtatga 328  Q
    ||||||||||||| |||||||  |||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||| ||||||||||    
T  39563377 tcacaacttcatcaaaagaaagggaattggggattgattttgcagaggtgtaccaaaattcagagttatacaggtattttcacttgtatga 39563287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 174 - 327
Target Start/End: Complemental strand, 1084152 - 1083999
Alignment:
Q  174 aagggaatccaaggtgttacgaagattaaagacggttataatccagcaacgtggatgttggaaatcacaacttcatctaaagaaatagaattggggattg 273  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||| ||| | ||||| |||||||    
T  1084152 aagggaatccaaggtgttaccaagattaaagacggttataatccagcaacatggatgttggaagtcacagcttcatctaaggaagtggaattagggattg 1084053  T
Q  274 attttgcagagttgtacaaaagttcagagttatacaggtatttttacttgtatg 327  Q
    ||||||||||| |||||||||  ||| |||||||||||||||||  ||||||||    
T  1084052 attttgcagaggtgtacaaaaactcacagttatacaggtattttcccttgtatg 1083999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 174 - 322
Target Start/End: Complemental strand, 39546785 - 39546637
Alignment:
Q  174 aagggaatccaaggtgttacgaagattaaagacggttataatccagcaacgtggatgttggaaatcacaacttcatctaaagaaatagaattggggattg 273  Q
    ||||||||||| |||||||  ||||| ||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||| ||||||||||    
T  39546785 aagggaatccatggtgttaacaagatcaaagagggttataatccagcaacatggatgttggaaatcacaaattcatctaaagaagtagatttggggattg 39546686  T
Q  274 attttgcagagttgtacaaaagttcagagttatacaggtatttttactt 322  Q
    ||||||||||| ||||||||| |||||| ||||||||||||||| ||||    
T  39546685 attttgcagaggtgtacaaaaattcagatttatacaggtattttcactt 39546637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 198 - 316
Target Start/End: Complemental strand, 39588504 - 39588386
Alignment:
Q  198 attaaagacggttataatccagcaacgtggatgttggaaatcacaacttcatctaaagaaatagaattggggattgattttgcagagttgtacaaaagtt 297  Q
    |||||||| || |||||||||||||| ||||| |||||| |||| ||||||||||||||| ||||||| ||| |||||||||| ||| |||||| || ||    
T  39588504 attaaagatggatataatccagcaacttggattttggaagtcactacttcatctaaagaattagaattaggggttgattttgctgaggtgtacataaatt 39588405  T
Q  298 cagagttatacaggtattt 316  Q
    ||   ||||||||||||||    
T  39588404 caacattatacaggtattt 39588386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 172 - 317
Target Start/End: Complemental strand, 39574052 - 39573907
Alignment:
Q  172 taaagggaatccaaggtgttacgaagattaaagacggttataatccagcaacgtggatgttggaaatcacaacttcatctaaagaaatagaattggggat 271  Q
    |||||||||| |||||||| |  ||| ||||||| || || ||||||||||| |||||||||||| | || |  ||| | |||||||| ||| ||| |||    
T  39574052 taaagggaatacaaggtgtcagtaagcttaaagatggctacaatccagcaacttggatgttggaagttactagctcagcaaaagaaatggaaatggagat 39573953  T
Q  272 tgattttgcagagttgtacaaaagttcagagttatacaggtatttt 317  Q
    | ||||||| ||| |||||||||| ||||| || ||||||||||||    
T  39573952 taattttgctgaggtgtacaaaagctcagaattgtacaggtatttt 39573907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 166 - 316
Target Start/End: Complemental strand, 39621391 - 39621241
Alignment:
Q  166 ttgtcttaaagggaatccaaggtgttacgaagattaaagacggttataatccagcaacgtggatgttggaaatcacaacttcatctaaagaaatagaatt 265  Q
    ||||||| ||||| ||  ||||||| |  |||||| |||| |||| ||| |||||| | |||||||||||||| ||  |||||   ||||||||  ||||    
T  39621391 ttgtcttgaaggggattgaaggtgtcagtaagattgaagatggttgtaacccagcagcttggatgttggaaattacttcttcagaaaaagaaatgcaatt 39621292  T
Q  266 ggggattgattttgcagagttgtacaaaagttcagagttatacaggtattt 316  Q
    || |||||||||| | ||  ||||||||| |||||| ||||||||||||||    
T  39621291 ggagattgatttttctgaagtgtacaaaaattcagaattatacaggtattt 39621241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 43
Target Start/End: Original strand, 39366824 - 39366857
Alignment:
Q  10 ataattcttccaatttaatcaattactttgaggt 43  Q
    ||||||||||||||||||||||||||||||||||    
T  39366824 ataattcttccaatttaatcaattactttgaggt 39366857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 43
Target Start/End: Complemental strand, 39563576 - 39563543
Alignment:
Q  10 ataattcttccaatttaatcaattactttgaggt 43  Q
    ||||||||||||||||||||||||||||||||||    
T  39563576 ataattcttccaatttaatcaattactttgaggt 39563543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 43
Target Start/End: Original strand, 39339398 - 39339431
Alignment:
Q  10 ataattcttccaatttaatcaattactttgaggt 43  Q
    ||||||||||||||||||||||| ||||||||||    
T  39339398 ataattcttccaatttaatcaatcactttgaggt 39339431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 43
Target Start/End: Original strand, 39354243 - 39354276
Alignment:
Q  10 ataattcttccaatttaatcaattactttgaggt 43  Q
    ||||||||||||||||||||||| ||||||||||    
T  39354243 ataattcttccaatttaatcaatcactttgaggt 39354276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 236
Target Start/End: Complemental strand, 2159944 - 2159903
Alignment:
Q  195 aagattaaagacggttataatccagcaacgtggatgttggaa 236  Q
    ||||||||||| ||||||||||| ||||| ||||||||||||    
T  2159944 aagattaaagatggttataatcctgcaacatggatgttggaa 2159903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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