View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14300_high_28 (Length: 318)
Name: NF14300_high_28
Description: NF14300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14300_high_28 |
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| [»] chr3 (6 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 37634487 - 37634170
Alignment:
| Q |
1 |
acggaaaaggtcccgcttcacctgtgctaccacctgcacctgccggttgggcttggtctctcaaccagttccgatcattccgttggaacttaaccgcttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37634487 |
acggaaaaggtcccgcttcacctgtgctaccacctgcacctgtcggttgggcttggtctctcaaccagttccgatcattccgttggaacttaaccgcttc |
37634388 |
T |
|
| Q |
101 |
tgctgctagacccaaccctcagggatcttaccattacggtcagatcaacattacccgcacaatcaagtttgttaactctgttagcaatgttaacggtaaa |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37634387 |
tgctgcaagacccaaccctcagggatcttaccattacggtcagatcaacattacccgcacaatcaagtttgttaactctgttagcaatgttaacggtaaa |
37634288 |
T |
|
| Q |
201 |
cttcgttatgctattaacggtgtttcccatgttgatcctgaaactcctgtgaagcttgctgagtactacggtgttgccgataaggtgttcaagtacaaca |
300 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
37634287 |
ctccgttatgctattaacggtgtttcccatgttgatcctgaaactcctgtgaagcttgctgagtactacggtgttgcggataaggtgttcaagtacaaca |
37634188 |
T |
|
| Q |
301 |
tcatctccgatgaacccc |
318 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
37634187 |
tcatctccgatgaacccc |
37634170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 37648602 - 37648285
Alignment:
| Q |
1 |
acggaaaaggtcccgcttcacctgtgctaccacctgcacctgccggttgggcttggtctctcaaccagttccgatcattccgttggaacttaaccgcttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37648602 |
acggaaaaggtcccgcttcacctgtgctaccacctgcacctgtcggttgggcttggtctctcaaccagttccgatcattccgttggaacttaaccgcttc |
37648503 |
T |
|
| Q |
101 |
tgctgctagacccaaccctcagggatcttaccattacggtcagatcaacattacccgcacaatcaagtttgttaactctgttagcaatgttaacggtaaa |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37648502 |
tgctgcaagacccaaccctcagggatcttaccattacggtcagatcaacattacccgcacaatcaagtttgttaactctgttagcaatgttaacggtaaa |
37648403 |
T |
|
| Q |
201 |
cttcgttatgctattaacggtgtttcccatgttgatcctgaaactcctgtgaagcttgctgagtactacggtgttgccgataaggtgttcaagtacaaca |
300 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
37648402 |
ctccgttatgctattaacggtgtttcccatgttgatcctgaaactcctgtgaagcttgctgagtactacggtgttgcggataaggtgttcaagtacaaca |
37648303 |
T |
|
| Q |
301 |
tcatctccgatgaacccc |
318 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
37648302 |
tcatctccgatgaacccc |
37648285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 37637401 - 37637084
Alignment:
| Q |
1 |
acggaaaaggtcccgcttcacctgtgctaccacctgcacctgccggttgggcttggtctctcaaccagttccgatcattccgttggaacttaaccgcttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37637401 |
acggaaaaggtcccgcttcacctgtgctaccacctgcacctgtcggttgggcttggtctctcaaccagttccgatcattccgttggaacttaaccgcttc |
37637302 |
T |
|
| Q |
101 |
tgctgctagacccaaccctcagggatcttaccattacggtcagatcaacattacccgcacaatcaagtttgttaactctgttagcaatgttaacggtaaa |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37637301 |
tgctgcaagacccaaccctcagggatcttaccattacggtcagatcaacattacccgcacaatcaagtttgttaactctgttagcaatgttaacggtaaa |
37637202 |
T |
|
| Q |
201 |
cttcgttatgctattaacggtgtttcccatgttgatcctgaaactcctgtgaagcttgctgagtactacggtgttgccgataaggtgttcaagtacaaca |
300 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
37637201 |
ctctgttatgctattaacggtgtttcccatgttgatcctgaaactcctgtgaagcttgctgagtactacggtgttgcggataaggtgttcaagtacaaca |
37637102 |
T |
|
| Q |
301 |
tcatctccgatgaacccc |
318 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
37637101 |
tcatctccgatgaacccc |
37637084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 37651514 - 37651197
Alignment:
| Q |
1 |
acggaaaaggtcccgcttcacctgtgctaccacctgcacctgccggttgggcttggtctctcaaccagttccgatcattccgttggaacttaaccgcttc |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37651514 |
acggaaaaggtcccgcttcacctatgctaccacctgcacctgtcggttgggcttggtctctcaaccagttccgatcattccgttggaacttaaccgcttc |
37651415 |
T |
|
| Q |
101 |
tgctgctagacccaaccctcagggatcttaccattacggtcagatcaacattacccgcacaatcaagtttgttaactctgttagcaatgttaacggtaaa |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37651414 |
tgctgcaagacccaaccctcagggatcttaccattacggtcagatcaacattacccgcacaatcaagtttgttaactctgttagcaatgttaacggtaaa |
37651315 |
T |
|
| Q |
201 |
cttcgttatgctattaacggtgtttcccatgttgatcctgaaactcctgtgaagcttgctgagtactacggtgttgccgataaggtgttcaagtacaaca |
300 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
37651314 |
ctccgttatgctattaacggtgtttcccatgttgatcctgaaactcctgtgaagcttgctgagtactacggtgttgcggataaggtgttcaagtacaaca |
37651215 |
T |
|
| Q |
301 |
tcatctccgatgaacccc |
318 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
37651214 |
tcatctccgatgaacccc |
37651197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 37640315 - 37639998
Alignment:
| Q |
1 |
acggaaaaggtcccgcttcacctgtgctaccacctgcacctgccggttgggcttggtctctcaaccagttccgatcattccgttggaacttaaccgcttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37640315 |
acggaaaaggtcccgcttcacctgtgctaccacctgcacctgtcggttgggcttggtctctcaaccagttccgatcattccgttggaacttaaccgcttc |
37640216 |
T |
|
| Q |
101 |
tgctgctagacccaaccctcagggatcttaccattacggtcagatcaacattacccgcacaatcaagtttgttaactctgttagcaatgttaacggtaaa |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37640215 |
tgctgcaagacccaaccctcagggatcttaccattacggtcagatcaacattacccgcacaatcaagtttgttaactctgttagcaatgttaacggtaaa |
37640116 |
T |
|
| Q |
201 |
cttcgttatgctattaacggtgtttcccatgttgatcctgaaactcctgtgaagcttgctgagtactacggtgttgccgataaggtgttcaagtacaaca |
300 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
37640115 |
ctctgttatgctattaacggtgtttcccatgttgatcctgaaactcctgtgaagcttgctgagtactacggtattgcggataaggtgttcaagtacaaca |
37640016 |
T |
|
| Q |
301 |
tcatctccgatgaacccc |
318 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
37640015 |
tcatctccgatgaacccc |
37639998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 37645689 - 37645372
Alignment:
| Q |
1 |
acggaaaaggtcccgcttcacctgtgctaccacctgcacctgccggttgggcttggtctctcaaccagttccgatcattccgttggaacttaaccgcttc |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37645689 |
acggaaaaggtcccgcttcacctttgctaccatctgcacctgtcggttgggcttggtctctcaaccagttccgatcattccgttggaacttaaccgcttc |
37645590 |
T |
|
| Q |
101 |
tgctgctagacccaaccctcagggatcttaccattacggtcagatcaacattacccgcacaatcaagtttgttaactctgttagcaatgttaacggtaaa |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37645589 |
tgctgcaagacccaaccctcagggatcttaccattacggtcagatcaacattacccgcacaatcaagtttgttaactctgttagcaatgttaacggtaaa |
37645490 |
T |
|
| Q |
201 |
cttcgttatgctattaacggtgtttcccatgttgatcctgaaactcctgtgaagcttgctgagtactacggtgttgccgataaggtgttcaagtacaaca |
300 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
37645489 |
ctccgttatgctattaacggtgtttcccatgttgatcctgaaactcctgtgaagcttgctgagtactacggtgttgcggataaggtgttcaagtacaaca |
37645390 |
T |
|
| Q |
301 |
tcatctccgatgaacccc |
318 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
37645389 |
tcatctccgatgaacccc |
37645372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 176
Target Start/End: Complemental strand, 32387819 - 32387661
Alignment:
| Q |
18 |
tcacctgtgctaccacctgcacctgccggttgggcttggtctctcaaccagttccgatcattccgttggaacttaaccgcttctgctgctagacccaacc |
117 |
Q |
| |
|
|||||||| || ||||||||||| | ||||||||||||||| | |||||| | || || ||||| ||||||||||||||| ||||||||| ||||| | |
|
|
| T |
32387819 |
tcacctgttctcccacctgcaccagttggttgggcttggtctttgaaccaggttcgttctttccgctggaacttaaccgctagtgctgctaggcccaatc |
32387720 |
T |
|
| Q |
118 |
ctcagggatcttaccattacggtcagatcaacattacccgcacaatcaagtttgttaac |
176 |
Q |
| |
|
|||| || |||||||||||||| ||||||||||| ||||| || |||||| | |||||| |
|
|
| T |
32387719 |
ctcaaggttcttaccattacggacagatcaacatcacccgtaccatcaagctcgttaac |
32387661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 48 - 157
Target Start/End: Complemental strand, 32381519 - 32381410
Alignment:
| Q |
48 |
tgggcttggtctctcaaccagttccgatcattccgttggaacttaaccgcttctgctgctagacccaaccctcagggatcttaccattacggtcagatca |
147 |
Q |
| |
|
||||| |||||| | || |||||||| || |||||||||||||| |||||| ||||||||| |||||||| || || |||||||||||||||||||||| |
|
|
| T |
32381519 |
tgggcatggtctttgaatcagttccgttctttccgttggaacttgaccgctagtgctgctaggcccaacccacaaggttcttaccattacggtcagatca |
32381420 |
T |
|
| Q |
148 |
acattacccg |
157 |
Q |
| |
|
|||| ||||| |
|
|
| T |
32381419 |
acatcacccg |
32381410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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