View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14300_high_34 (Length: 263)

Name: NF14300_high_34
Description: NF14300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14300_high_34
NF14300_high_34
[»] chr8 (19 HSPs)
chr8 (148-237)||(900296-900386)
chr8 (148-233)||(37919364-37919450)
chr8 (57-133)||(20821932-20822007)
chr8 (57-133)||(28462539-28462615)
chr8 (148-227)||(28462606-28462685)
chr8 (148-225)||(38362266-38362344)
chr8 (62-129)||(39209364-39209430)
chr8 (148-222)||(39534200-39534275)
chr8 (148-186)||(20821903-20821941)
chr8 (72-129)||(39065545-39065601)
chr8 (148-228)||(29795476-29795556)
chr8 (72-131)||(900244-900303)
chr8 (148-202)||(30924829-30924883)
chr8 (148-202)||(41675733-41675787)
chr8 (61-131)||(42654631-42654700)
chr8 (96-133)||(37919441-37919478)
chr8 (73-133)||(14110626-14110684)
chr8 (148-227)||(39065596-39065676)
chr8 (148-192)||(42654594-42654638)
[»] chr5 (21 HSPs)
chr5 (148-232)||(2611211-2611296)
chr5 (148-228)||(7609602-7609683)
chr5 (148-230)||(14863304-14863387)
chr5 (148-223)||(31619295-31619370)
chr5 (148-227)||(35185229-35185307)
chr5 (57-133)||(2611144-2611220)
chr5 (148-233)||(11320091-11320176)
chr5 (62-133)||(11320167-11320237)
chr5 (148-227)||(12187154-12187235)
chr5 (62-133)||(21052629-21052699)
chr5 (56-131)||(22180250-22180324)
chr5 (148-229)||(21052690-21052772)
chr5 (57-133)||(7609536-7609611)
chr5 (148-200)||(22180317-22180369)
chr5 (57-133)||(35185298-35185373)
chr5 (96-133)||(14863378-14863415)
chr5 (148-227)||(16801998-16802078)
chr5 (148-230)||(1447616-1447700)
chr5 (162-228)||(8435026-8435094)
chr5 (148-230)||(28511211-28511295)
chr5 (72-104)||(31619388-31619420)
[»] chr2 (15 HSPs)
chr2 (148-226)||(21646539-21646618)
chr2 (148-229)||(11610472-11610554)
chr2 (148-205)||(18243801-18243858)
chr2 (148-227)||(19889716-19889796)
chr2 (62-131)||(32345521-32345590)
chr2 (82-133)||(4141681-4141732)
chr2 (66-133)||(21646482-21646548)
chr2 (148-228)||(23788468-23788548)
chr2 (57-133)||(19889787-19889863)
chr2 (97-133)||(44818428-44818464)
chr2 (148-204)||(4141635-4141690)
chr2 (96-133)||(23788440-23788477)
chr2 (57-121)||(18243300-18243364)
chr2 (148-200)||(32345477-32345528)
chr2 (148-200)||(37913066-37913118)
[»] chr1 (31 HSPs)
chr1 (21-131)||(15419610-15419720)
chr1 (148-245)||(15419713-15419811)
chr1 (148-233)||(50127410-50127496)
chr1 (150-227)||(16963639-16963716)
chr1 (148-228)||(31884522-31884603)
chr1 (55-133)||(50468800-50468878)
chr1 (148-228)||(26855889-26855969)
chr1 (148-231)||(44109133-44109217)
chr1 (57-133)||(33827820-33827896)
chr1 (57-133)||(33840069-33840145)
chr1 (57-133)||(40391213-40391289)
chr1 (74-133)||(44109083-44109142)
chr1 (148-202)||(13534559-13534613)
chr1 (148-229)||(27742523-27742604)
chr1 (62-133)||(19066902-19066972)
chr1 (62-133)||(19114792-19114862)
chr1 (62-133)||(26855827-26855898)
chr1 (148-203)||(40391280-40391335)
chr1 (51-133)||(30627605-30627686)
chr1 (148-201)||(19066858-19066911)
chr1 (148-201)||(19114748-19114801)
chr1 (148-200)||(33827887-33827939)
chr1 (148-200)||(33840026-33840078)
chr1 (57-133)||(48282887-48282962)
chr1 (148-200)||(50468869-50468921)
chr1 (159-202)||(20359312-20359355)
chr1 (159-202)||(20551615-20551658)
chr1 (152-225)||(30627681-30627755)
chr1 (152-201)||(18910471-18910520)
chr1 (57-133)||(20471328-20471403)
chr1 (57-133)||(20560134-20560209)
[»] chr3 (30 HSPs)
chr3 (148-229)||(43862910-43862992)
chr3 (150-231)||(43014611-43014694)
chr3 (148-227)||(44291292-44291372)
chr3 (150-228)||(23208206-23208285)
chr3 (148-229)||(42163669-42163751)
chr3 (28-133)||(27144041-27144146)
chr3 (148-233)||(32720583-32720668)
chr3 (152-227)||(36258648-36258725)
chr3 (57-133)||(42163602-42163678)
chr3 (57-133)||(44041320-44041396)
chr3 (57-133)||(44291226-44291301)
chr3 (73-133)||(49419063-49419123)
chr3 (148-230)||(15671179-15671262)
chr3 (62-133)||(17109535-17109606)
chr3 (72-133)||(36258720-36258781)
chr3 (148-228)||(43652531-43652612)
chr3 (148-225)||(27143974-27144050)
chr3 (57-133)||(15671113-15671188)
chr3 (62-126)||(23208145-23208209)
chr3 (64-131)||(32720523-32720590)
chr3 (148-230)||(52992414-52992495)
chr3 (62-127)||(43014696-43014760)
chr3 (148-195)||(17109597-17109644)
chr3 (148-222)||(49710921-49710996)
chr3 (148-190)||(35322018-35322060)
chr3 (72-133)||(35322051-35322109)
chr3 (84-133)||(43862983-43863032)
chr3 (148-229)||(49419114-49419195)
chr3 (57-131)||(49710989-49711061)
chr3 (29-133)||(43652437-43652540)
[»] scaffold0006 (2 HSPs)
scaffold0006 (148-229)||(38771-38852)
scaffold0006 (72-133)||(38843-38903)
[»] chr4 (11 HSPs)
chr4 (32-133)||(31241923-31242023)
chr4 (148-233)||(31647686-31647772)
chr4 (67-133)||(38320124-38320190)
chr4 (57-133)||(31647763-31647838)
chr4 (148-227)||(38320181-38320261)
chr4 (152-227)||(20542717-20542792)
chr4 (62-127)||(38319541-38319606)
chr4 (57-131)||(47397649-47397722)
chr4 (148-200)||(19147210-19147262)
chr4 (62-133)||(16341103-16341173)
chr4 (57-133)||(19147144-19147219)
[»] chr7 (16 HSPs)
chr7 (148-228)||(8117506-8117587)
chr7 (57-133)||(22035774-22035850)
chr7 (148-202)||(36636070-36636124)
chr7 (148-200)||(16563532-16563584)
chr7 (148-200)||(16602078-16602130)
chr7 (148-230)||(45907096-45907179)
chr7 (62-133)||(36636009-36636079)
chr7 (148-197)||(19689502-19689550)
chr7 (29-133)||(19689541-19689645)
chr7 (61-133)||(41434743-41434814)
chr7 (62-133)||(45907035-45907105)
chr7 (148-188)||(22035743-22035783)
chr7 (192-228)||(26203126-26203162)
chr7 (148-229)||(41434673-41434752)
chr7 (148-226)||(21798770-21798848)
chr7 (159-229)||(7833817-7833889)
[»] scaffold0068 (2 HSPs)
scaffold0068 (148-200)||(52011-52063)
scaffold0068 (62-133)||(52054-52124)
[»] scaffold0078 (2 HSPs)
scaffold0078 (62-133)||(862-933)
scaffold0078 (148-199)||(924-975)
[»] chr6 (6 HSPs)
chr6 (57-132)||(21809802-21809876)
chr6 (148-229)||(17506233-17506317)
chr6 (148-202)||(21809868-21809922)
chr6 (28-133)||(17506308-17506412)
chr6 (148-204)||(4803150-4803206)
chr6 (148-220)||(10008171-10008244)
[»] scaffold0886 (2 HSPs)
scaffold0886 (68-133)||(1112-1176)
scaffold0886 (148-200)||(1167-1219)
[»] scaffold0034 (2 HSPs)
scaffold0034 (148-228)||(22486-22567)
scaffold0034 (57-133)||(22420-22495)
[»] scaffold1372 (2 HSPs)
scaffold1372 (62-118)||(1272-1327)
scaffold1372 (148-181)||(1344-1377)
[»] scaffold0079 (1 HSPs)
scaffold0079 (62-133)||(51688-51758)
[»] scaffold0204 (1 HSPs)
scaffold0204 (54-86)||(15359-15391)


Alignment Details
Target: chr8 (Bit Score: 67; Significance: 7e-30; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 148 - 237
Target Start/End: Original strand, 900296 - 900386
Alignment:
Q  148 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatgccc-gagggcactggttaacattctccttatttcatt 237  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | | |||| ||||||||||||||||||||||||    
T  900296 aataattatattactttttaataaaaacttactttatttggtgtttaaccaatgccctgggagcaccggttaacattctccttatttcatt 900386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 148 - 233
Target Start/End: Complemental strand, 37919450 - 37919364
Alignment:
Q  148 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatgc-ccgagggcactggttaacattctccttattt 233  Q
    ||||||||||||||||||||||||||| |||||||||| |||| ||||||||||| |||  ||||| |||||| |||||||||||||    
T  37919450 aataattacattactttttaataaaaatttactttattcggtgcttaaccaatgctccggaggcaccggttaatattctccttattt 37919364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 57 - 133
Target Start/End: Complemental strand, 20822007 - 20821932
Alignment:
Q  57 actgattaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 133  Q
    |||||||||| ||| |||| |||||||| | | ||||| ||||||||||||||||||||||||||||||||||||||    
T  20822007 actgattaagaaatctatagatagaattgt-tgtcttaaaaatataaattgtcactttttattaagtaataattaca 20821932  T

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Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 57 - 133
Target Start/End: Original strand, 28462539 - 28462615
Alignment:
Q  57 actgattaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 133  Q
    |||| |||| |||| ||||||||||||||| | |||| |||||||||| | ||||||||||||||||||||||||||    
T  28462539 actggttaaagaatctataaatagaattttttgtcttggaaatataaactatcactttttattaagtaataattaca 28462615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 227
Target Start/End: Original strand, 28462606 - 28462685
Alignment:
Q  148 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatg-cccgagggcactggttaacattctcc 227  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||| | ||||||||| | |||||||    
T  28462606 aataattacattactttt-aataaaaacttacttcatttggtgtttaaccaatgtcccgggagcactggtttatattctcc 28462685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 148 - 225
Target Start/End: Original strand, 38362266 - 38362344
Alignment:
Q  148 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatgc-ccgagggcactggttaacattct 225  Q
    |||||||||||| |||||||||||||| |||||||||||| || |||||||||||  || |||||| ||||||||||||    
T  38362266 aataattacattgctttttaataaaaatttactttatttgatgcttaaccaatgcatcgggggcaccggttaacattct 38362344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 129
Target Start/End: Original strand, 39209364 - 39209430
Alignment:
Q  62 ttaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataat 129  Q
    ||||||||||||||||||||||||||| | || |||||||||| |||||| ||||||||| |||||||    
T  39209364 ttaaggaatttataaatagaattttctgttttggaaatataaactgtcac-ttttattaaataataat 39209430  T

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Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 222
Target Start/End: Original strand, 39534200 - 39534275
Alignment:
Q  148 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatgccc-gagggcactggttaacat 222  Q
    ||||||||||||||||||||||||||| |||| | |||||||| ||||| || |||| | ||||||||||||||||    
T  39534200 aataattacattactttttaataaaaatttacctcatttggtgcttaactaacgccctgggggcactggttaacat 39534275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 148 - 186
Target Start/End: Complemental strand, 20821941 - 20821903
Alignment:
Q  148 aataattacattactttttaataaaaacttactttattt 186  Q
    |||||||||||||||||||||||||||||||||||||||    
T  20821941 aataattacattactttttaataaaaacttactttattt 20821903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 129
Target Start/End: Original strand, 39065545 - 39065601
Alignment:
Q  72 tataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataat 129  Q
    |||||||||||||| || ||||| ||||||||| ||||||||||||| ||||||||||    
T  39065545 tataaatagaattt-ctgtcttaaaaatataaactgtcactttttatcaagtaataat 39065601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 228
Target Start/End: Complemental strand, 29795556 - 29795476
Alignment:
Q  148 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatgcccgagggcactggttaacattctcct 228  Q
    ||||||||||||||||||||| ||||||||| ||  ||||||| ||||| |||| ||  || || || |||||||||||||    
T  29795556 aataattacattactttttaacaaaaacttaattcttttggtgcttaacgaatgtccttggacattgtttaacattctcct 29795476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 72 - 131
Target Start/End: Original strand, 900244 - 900303
Alignment:
Q  72 tataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataatta 131  Q
    |||||||| |||||||| ||||  |||| |||| ||||| ||||||||||||||||||||    
T  900244 tataaatataattttctgtcttgaaaatttaaactgtcattttttattaagtaataatta 900303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 202
Target Start/End: Complemental strand, 30924883 - 30924829
Alignment:
Q  148 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatgc 202  Q
    ||||||||||||||||| ||| ||||||||||||  ||||||| |||||| ||||    
T  30924883 aataattacattactttctaacaaaaacttacttcttttggtgcttaaccgatgc 30924829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 202
Target Start/End: Original strand, 41675733 - 41675787
Alignment:
Q  148 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatgc 202  Q
    |||||||| ||| |||||||||||||| ||||||  ||||||| |||||||||||    
T  41675733 aataattatatttctttttaataaaaatttacttcttttggtgcttaaccaatgc 41675787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 131
Target Start/End: Complemental strand, 42654700 - 42654631
Alignment:
Q  61 attaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataatta 131  Q
    ||||| |||| ||| |||| |||||| | ||||||||||||||| | ||| ||||||||||||||||||||    
T  42654700 attaaagaatctatcaataaaatttt-tgtcttagaaatataaactatcattttttattaagtaataatta 42654631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 96 - 133
Target Start/End: Complemental strand, 37919478 - 37919441
Alignment:
Q  96 aaatataaattgtcactttttattaagtaataattaca 133  Q
    ||||||||| ||||| ||||||||||||||||||||||    
T  37919478 aaatataaactgtcattttttattaagtaataattaca 37919441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 133
Target Start/End: Original strand, 14110626 - 14110684
Alignment:
Q  73 ataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 133  Q
    ||||||| |||||| | |||||||||||||||  ||||||||||| |||||||||||||||    
T  14110626 ataaatataatttt-tgtcttagaaatataaaccgtcacttttta-taagtaataattaca 14110684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 227
Target Start/End: Original strand, 39065596 - 39065676
Alignment:
Q  148 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatgcccgag-ggcactggttaacattctcc 227  Q
    |||||| |||||| ||||||||||||| ||||||  ||| ||| ||||||||||| | || |||||| |||| ||||||||    
T  39065596 aataatgacattattttttaataaaaatttacttcttttagtgcttaaccaatgctccagaggcactagttagcattctcc 39065676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 42654638 - 42654594
Alignment:
Q  148 aataattacattactttttaataaaaacttactttatttggtgtt 192  Q
    |||||||| ||| ||||| || |||||||||||||||||||||||    
T  42654638 aataattatattgcttttaaaaaaaaacttactttatttggtgtt 42654594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 7e-27; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 148 - 232
Target Start/End: Original strand, 2611211 - 2611296
Alignment:
Q  148 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatgcccga-gggcactggttaacattctccttatt 232  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| | |||| |||||||||||||||||||||    
T  2611211 aataattacattactttttaataaaaacttacttcatttggtgcttaaccaatgccccaggggccctggttaacattctccttatt 2611296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 148 - 228
Target Start/End: Original strand, 7609602 - 7609683
Alignment:
Q  148 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatg-cccgagggcactggttaacattctcct 228  Q
    ||||||||||||||||||||||||||||||||||  ||||||| |||||||||| |||| | ||||||||||||||||||||    
T  7609602 aataattacattactttttaataaaaacttacttcttttggtgcttaaccaatgccccgggagcactggttaacattctcct 7609683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 148 - 230
Target Start/End: Complemental strand, 14863387 - 14863304
Alignment:
Q  148 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatg-cccgagggcactggttaacattctcctta 230  Q
    ||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||  ||| |||||||| |||||||||||||||    
T  14863387 aataattacattaatttttaataaaaacttactttttttggtgcttaaccaatgttccgggggcactgattaacattctcctta 14863304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 148 - 223
Target Start/End: Complemental strand, 31619370 - 31619295
Alignment:
Q  148 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatgcccgagggcactggttaacatt 223  Q
    ||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||   ||||||||||||||||    
T  31619370 aataattacattactttttaataaaaatttacttcatttggtgcttaaccaatgcccagaggcactggttaacatt 31619295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 148 - 227
Target Start/End: Complemental strand, 35185307 - 35185229
Alignment:
Q  148 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatgcccgagggcactggttaacattctcc 227  Q
    ||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||  |||  ||||||||||||||    
T  35185307 aataattacattactttttaataaaaacttattttatttggtgcttaaccaatacccga-agcatcggttaacattctcc 35185229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 57 - 133
Target Start/End: Original strand, 2611144 - 2611220
Alignment:
Q  57 actgattaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 133  Q
    |||| ||||||||| ||||||||||| ||| | |||| |||||||||  ||||||||||||||||||||||||||||    
T  2611144 actggttaaggaatctataaatagaaatttatgtcttggaaatataagctgtcactttttattaagtaataattaca 2611220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 148 - 233
Target Start/End: Complemental strand, 11320176 - 11320091
Alignment:
Q  148 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatg-cccgagggcactggttaacattctccttattt 233  Q
    ||||||||||||||||||||||||||| | ||||| ||||||| |||||||||| | | | | ||||||||||||||||||||||||    
T  11320176 aataattacattactttttaataaaaattaacttt-tttggtgcttaaccaatgtctcaatgacactggttaacattctccttattt 11320091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 133
Target Start/End: Complemental strand, 11320237 - 11320167
Alignment:
Q  62 ttaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 133  Q
    ||||||||| ||||| || ||||| || ||||||||||||||| ||||||||||||| ||||||||||||||    
T  11320237 ttaaggaatctataattaaaattt-ctatcttagaaatataaactgtcactttttatcaagtaataattaca 11320167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 227
Target Start/End: Complemental strand, 12187235 - 12187154
Alignment:
Q  148 aataattacattacttttt-aataaaaacttactttatttggtgtttaaccaatgcccgaggg-cactggttaacattctcc 227  Q
    ||||||||||||| ||||| ||||||||||||| |||||||||| |||| |||||||  |||| ||| ||||||||||||||    
T  12187235 aataattacattatttttttaataaaaacttaccttatttggtgcttaatcaatgcctcagggacacaggttaacattctcc 12187154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 133
Target Start/End: Original strand, 21052629 - 21052699
Alignment:
Q  62 ttaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 133  Q
    |||||||||||||||||| ||||| |  ||||  ||||||||| ||||||||||||| ||||||||||||||    
T  21052629 ttaaggaatttataaataaaatttcca-tcttgcaaatataaactgtcactttttatcaagtaataattaca 21052699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 131
Target Start/End: Original strand, 22180250 - 22180324
Alignment:
Q  56 tactgattaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataatta 131  Q
    ||||||||||||||| |||||||| |||||||| | ||  ||||||||| ||||| |||||||||| |||||||||    
T  22180250 tactgattaaggaatctataaataaaattttctattttgaaaatataaactgtca-tttttattaaataataatta 22180324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 148 - 229
Target Start/End: Original strand, 21052690 - 21052772
Alignment:
Q  148 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatgcccgagg-gcactggttaacattctcctt 229  Q
    ||||||||||| | ||||||||||||||||||||  ||||||| ||||||||||  | |||  ||||| ||||||||||||||    
T  21052690 aataattacatgattttttaataaaaacttacttcttttggtgcttaaccaatgttccaggtacactgattaacattctcctt 21052772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 133
Target Start/End: Original strand, 7609536 - 7609611
Alignment:
Q  57 actgattaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 133  Q
    |||||||||||||| ||||| |||||||| || | || |||||||||| | ||| ||||||| ||||||||||||||    
T  7609536 actgattaaggaatctataattagaattt-ctgttttggaaatataaactatcattttttatcaagtaataattaca 7609611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 200
Target Start/End: Original strand, 22180317 - 22180369
Alignment:
Q  148 aataattacattactttttaataaaaacttactttatttggtgtttaaccaat 200  Q
    |||||||| |||| ||||||||||||| ||| ||||||||||| |||||||||    
T  22180317 aataattatattattttttaataaaaatttattttatttggtgcttaaccaat 22180369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 133
Target Start/End: Complemental strand, 35185373 - 35185298
Alignment:
Q  57 actgattaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 133  Q
    |||| |||| |||| ||||||||||||||| | ||||  ||||||||| |||||| ||||||| |||||||||||||    
T  35185373 actggttaaagaatctataaatagaattttatgtcttgaaaatataaactgtcac-ttttatttagtaataattaca 35185298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 96 - 133
Target Start/End: Complemental strand, 14863415 - 14863378
Alignment:
Q  96 aaatataaattgtcactttttattaagtaataattaca 133  Q
    ||||||||| ||||||||||||| ||||||||||||||    
T  14863415 aaatataaactgtcactttttatcaagtaataattaca 14863378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 148 - 227
Target Start/End: Complemental strand, 16802078 - 16801998
Alignment:
Q  148 aataattacattactttttaataaaaacttactttatttgg-tgtttaaccaatgccc-gagggcactggttaacattctcc 227  Q
    ||||||||||||||||||| ||||||| ||| ||  ||||| || ||||||||| ||| |||||||||| ||||||||||||    
T  16802078 aataattacattacttttt-ataaaaagttatttgttttggttgcttaaccaataccctgagggcactgtttaacattctcc 16801998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 230
Target Start/End: Original strand, 1447616 - 1447700
Alignment:
Q  148 aataattacattactttttaataaaaacttactt-tatttggtgtttaaccaatgccc-gagggcactggttaacattctcctta 230  Q
    |||||||||| ||||||| | ||||||||||||| | |||| || |||||||||||||  |||||| | |||| |||||||||||    
T  1447616 aataattacactacttttcattaaaaacttacttatttttgttgcttaaccaatgccctaagggcaatagttagcattctcctta 1447700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 228
Target Start/End: Complemental strand, 8435094 - 8435026
Alignment:
Q  162 tttttaataaaaacttactttatttgg-tgtttaaccaatgcccgaggg-cactggttaacattctcct 228  Q
    |||||||||||| |||||||  ||||| || ||||||||||||  |||| |||||||||||||||||||    
T  8435094 tttttaataaaatcttacttattttggatgcttaaccaatgcctcaggggcactggttaacattctcct 8435026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 230
Target Start/End: Original strand, 28511211 - 28511295
Alignment:
Q  148 aataattacattacttttta-ataaaaacttactttatttggt-gtttaaccaatgcccgagggcactggttaacattctcctta 230  Q
    |||||||||| ||||||||  |||||||||||| |  |||||| | ||||||||| ||| ||||||| |||||||||||| ||||    
T  28511211 aataattacactactttttttataaaaacttacatgttttggttgcttaaccaataccccagggcaccggttaacattctactta 28511295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 104
Target Start/End: Complemental strand, 31619420 - 31619388
Alignment:
Q  72 tataaatagaattttctctcttagaaatataaa 104  Q
    ||||||||||||||||| |||||||||||||||    
T  31619420 tataaatagaattttctgtcttagaaatataaa 31619388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 148 - 226
Target Start/End: Original strand, 21646539 - 21646618
Alignment:
Q  148 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatg-cccgagggcactggttaacattctc 226  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||    
T  21646539 aataattacattactttttaatgaaaacttacttcatttggtgtttaaccaatgcccctagggcactggttaacattctc 21646618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 148 - 229
Target Start/End: Original strand, 11610472 - 11610554
Alignment:
Q  148 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatg-cccgagggcactggttaacattctcctt 229  Q
    ||||||| |||||||||||||| ||||||||||| |||||||| |||||||||| |||| |||||||||||||||||||||||    
T  11610472 aataattgcattactttttaatgaaaacttacttcatttggtgcttaaccaatgccccgggggcactggttaacattctcctt 11610554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 148 - 205
Target Start/End: Original strand, 18243801 - 18243858
Alignment:
Q  148 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatgcccg 205  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  18243801 aataattatattactttttaataaaaacttactttatttggtgcttaaccaatgcccg 18243858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 148 - 227
Target Start/End: Complemental strand, 19889796 - 19889716
Alignment:
Q  148 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatg-cccgagggcactggttaacattctcc 227  Q
    |||||||||||||||||||||| ||||||||||| ||||| || |||||||||| ||||| ||||||| ||||||||||||    
T  19889796 aataattacattactttttaatgaaaacttacttcatttgatgcttaaccaatgccccgaaggcactgattaacattctcc 19889716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 62 - 131
Target Start/End: Complemental strand, 32345590 - 32345521
Alignment:
Q  62 ttaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataatta 131  Q
    |||||||| |||||||||||||||||| ||||| ||||||||| ||||| |||||||||| |||||||||    
T  32345590 ttaaggaaattataaatagaattttctgtcttaaaaatataaactgtcattttttattaaataataatta 32345521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 133
Target Start/End: Complemental strand, 4141732 - 4141681
Alignment:
Q  82 attttctctcttagaaatataaattgtcactttttattaagtaataattaca 133  Q
    |||||||||||||||||||||||  ||||||||||||| |||||||||||||    
T  4141732 attttctctcttagaaatataaaccgtcactttttattcagtaataattaca 4141681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 133
Target Start/End: Original strand, 21646482 - 21646548
Alignment:
Q  66 ggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 133  Q
    ||||| |||| |||||||||||| |||| |||||||||| |||||| |||||||||||||||||||||    
T  21646482 ggaatctatacatagaattttctgtcttggaaatataaagtgtcac-ttttattaagtaataattaca 21646548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 228
Target Start/End: Original strand, 23788468 - 23788548
Alignment:
Q  148 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatgc-ccgagggcactggttaacattctcct 228  Q
    ||||||||||||||||||||||||||| ||| ||| |||||||||||| |||| | |||||  || ||||||||||||||||    
T  23788468 aataattacattactttttaataaaaattta-tttttttggtgtttaatcaatacaccgagaacattggttaacattctcct 23788548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 57 - 133
Target Start/End: Complemental strand, 19889863 - 19889787
Alignment:
Q  57 actgattaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 133  Q
    |||| ||||| ||| ||||||||||||||| | | || |||||||||  |||||| |||||||||||||||||||||    
T  19889863 actggttaagaaatctataaatagaattttatgttttggaaatataatatgtcaccttttattaagtaataattaca 19889787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 97 - 133
Target Start/End: Original strand, 44818428 - 44818464
Alignment:
Q  97 aatataaattgtcactttttattaagtaataattaca 133  Q
    |||||||||||||||||||||||||||||||||||||    
T  44818428 aatataaattgtcactttttattaagtaataattaca 44818464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 204
Target Start/End: Complemental strand, 4141690 - 4141635
Alignment:
Q  148 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatgccc 204  Q
    |||||||||||||||||| |||||||| |||||||||||| || |||| ||||||||    
T  4141690 aataattacattactttt-aataaaaatttactttatttgatgcttaatcaatgccc 4141635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 96 - 133
Target Start/End: Original strand, 23788440 - 23788477
Alignment:
Q  96 aaatataaattgtcactttttattaagtaataattaca 133  Q
    ||||||||||| ||| ||||||||||||||||||||||    
T  23788440 aaatataaattatcattttttattaagtaataattaca 23788477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 121
Target Start/End: Original strand, 18243300 - 18243364
Alignment:
Q  57 actgattaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaa 121  Q
    |||| ||||||||| |||||||| |||||| | | || |||||||||| | ||||||||||||||    
T  18243300 actggttaaggaatctataaataaaattttttgttttggaaatataaactttcactttttattaa 18243364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 200
Target Start/End: Complemental strand, 32345528 - 32345477
Alignment:
Q  148 aataattacattactttttaataaaaacttactttatttggtgtttaaccaat 200  Q
    |||||||| |||| ||||| |||||||||||||||||||  ||||||||||||    
T  32345528 aataattatatta-tttttgataaaaacttactttatttattgtttaaccaat 32345477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 200
Target Start/End: Original strand, 37913066 - 37913118
Alignment:
Q  148 aataattacattactttttaataaaaacttactttatttggtgtttaaccaat 200  Q
    |||||| |||||| ||||||||||||||||||||  |||| || |||||||||    
T  37913066 aataatcacattaatttttaataaaaacttacttcttttgatgcttaaccaat 37913118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 21 - 131
Target Start/End: Original strand, 15419610 - 15419720
Alignment:
Q  21 tgtttcatgggtcttgttaacagatgctcctgagatactgattaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttatta 120  Q
    ||||||||||||||||||||||| |||||| | | ||||| |||| |||| ||||||||||||||| | | || |||||||||| ||| |||||||||||    
T  15419610 tgtttcatgggtcttgttaacaggtgctcccgtggtactggttaatgaatctataaatagaattttttgtattggaaatataaactgttactttttatta 15419709  T
Q  121 agtaataatta 131  Q
    |||||||||||    
T  15419710 agtaataatta 15419720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 148 - 245
Target Start/End: Original strand, 15419713 - 15419811
Alignment:
Q  148 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatgc-ccgagggcactggttaacattctccttatttcattgcagtatt 245  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||  | ||| |||||| |||||||||||||||||||| ||||    
T  15419713 aataattatattactttttaataaaaatttactttatttggtgtttaaccaatgctccggagacacgggttaatattctccttatttcattgcactatt 15419811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 148 - 233
Target Start/End: Original strand, 50127410 - 50127496
Alignment:
Q  148 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatg-cccgagggcactggttaacattctccttattt 233  Q
    ||||||||||||||||||||||||||||||||||  ||||||  |||||||||| |||| ||||||||||||||||||||| |||||    
T  50127410 aataattacattactttttaataaaaacttacttcttttggtacttaaccaatgccccgggggcactggttaacattctccatattt 50127496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 150 - 227
Target Start/End: Original strand, 16963639 - 16963716
Alignment:
Q  150 taattacattactttttaataaaaacttactttatttggtgtttaaccaatgcccgagggcactggttaacattctcc 227  Q
    ||||||||||||||||||||||||| |||||| |||||||| ||||||||||| |  |||||||||||||||||||||    
T  16963639 taattacattactttttaataaaaatttacttcatttggtgcttaaccaatgctccggggcactggttaacattctcc 16963716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 148 - 228
Target Start/End: Original strand, 31884522 - 31884603
Alignment:
Q  148 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatgcc-cgagggcactggttaacattctcct 228  Q
    ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |  ||||| ||||||||||||||||    
T  31884522 aataattacattactttttaataaaaacttactttttttggtgcttaaccaatgcctccggggcaatggttaacattctcct 31884603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 55 - 133
Target Start/End: Original strand, 50468800 - 50468878
Alignment:
Q  55 atactgattaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 133  Q
    |||||| ||||||||| |||||||| |||||||| ||||||||||||||  ||||| ||||||||||||||||||||||    
T  50468800 atactggttaaggaatctataaataaaattttctatcttagaaatataacctgtcattttttattaagtaataattaca 50468878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 148 - 228
Target Start/End: Original strand, 26855889 - 26855969
Alignment:
Q  148 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatg-cccgagggcactggttaacattctcct 228  Q
    |||||||||||||||||| |||||||| ||||||||||||||| |||||||||| ||||  ||||| |||||||||||||||    
T  26855889 aataattacattactttt-aataaaaatttactttatttggtgcttaaccaatgccccggaggcaccggttaacattctcct 26855969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 148 - 231
Target Start/End: Original strand, 44109133 - 44109217
Alignment:
Q  148 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatg-cccga-gggcactggttaacattctccttat 231  Q
    |||||||||||||||||||||||||||||||||| |||| ||| |||| ||||| ||||| ||||||||||||||||| |||||||    
T  44109133 aataattacattactttttaataaaaacttacttcattt-gtggttaatcaatgccccgaggggcactggttaacattatccttat 44109217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 57 - 133
Target Start/End: Original strand, 33827820 - 33827896
Alignment:
Q  57 actgattaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 133  Q
    |||| ||||||||| |||||||| |||||||| |||| ||||||||||   ||||||||||||||||||||||||||    
T  33827820 actggttaaggaatctataaataaaattttctgtcttggaaatataaacgatcactttttattaagtaataattaca 33827896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 57 - 133
Target Start/End: Complemental strand, 33840145 - 33840069
Alignment:
Q  57 actgattaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 133  Q
    |||| ||||||||| |||||||| |||||||| |||| ||||||||||   ||||||||||||||||||||||||||    
T  33840145 actggttaaggaatctataaataaaattttctgtcttggaaatataaacgatcactttttattaagtaataattaca 33840069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 57 - 133
Target Start/End: Original strand, 40391213 - 40391289
Alignment:
Q  57 actgattaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 133  Q
    |||||||||| ||| ||||||| ||||||||| ||||  ||||||||| ||||||||||||| ||||||||||||||    
T  40391213 actgattaagaaatctataaatcgaattttctgtcttgaaaatataaactgtcactttttatcaagtaataattaca 40391289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 74 - 133
Target Start/End: Original strand, 44109083 - 44109142
Alignment:
Q  74 taaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 133  Q
    ||||||||||||||| |||| |||||||||| |||| |||||||||||||||||||||||    
T  44109083 taaatagaattttctatcttggaaatataaactgtccctttttattaagtaataattaca 44109142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 148 - 202
Target Start/End: Original strand, 13534559 - 13534613
Alignment:
Q  148 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatgc 202  Q
    ||||||||||||||||||||||||||| ||||||||||||| | |||||||||||    
T  13534559 aataattacattactttttaataaaaatttactttatttggcgcttaaccaatgc 13534613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 148 - 229
Target Start/End: Complemental strand, 27742604 - 27742523
Alignment:
Q  148 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatgcccgagggcactggttaacattctcctt 229  Q
    ||||||||||||||||||||||||||| ||||||  |||| || |||||||||||||| |  |||  |||||||||||||||    
T  27742604 aataattacattactttttaataaaaaattacttcttttgttgcttaaccaatgcccgggaacaccagttaacattctcctt 27742523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 133
Target Start/End: Complemental strand, 19066972 - 19066902
Alignment:
Q  62 ttaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 133  Q
    ||||| ||| ||||||||||||| | | ||||||||||||||||||||||||||||  ||||||||||||||    
T  19066972 ttaagaaatctataaatagaattgt-tgtcttagaaatataaattgtcactttttaccaagtaataattaca 19066902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 133
Target Start/End: Complemental strand, 19114862 - 19114792
Alignment:
Q  62 ttaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 133  Q
    ||||| ||| ||||||||||||| | | ||||||||||||||||||||||||||||  ||||||||||||||    
T  19114862 ttaagaaatctataaatagaattgt-tgtcttagaaatataaattgtcactttttaccaagtaataattaca 19114792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 133
Target Start/End: Original strand, 26855827 - 26855898
Alignment:
Q  62 ttaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 133  Q
    |||| |||| ||||||||||||||| | |||| |||||||||  ||||||||||||| ||||||||||||||    
T  26855827 ttaaagaatctataaatagaattttttgtcttggaaatataatctgtcactttttatcaagtaataattaca 26855898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 203
Target Start/End: Original strand, 40391280 - 40391335
Alignment:
Q  148 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatgcc 203  Q
    ||||||||||||||||||| ||||||||| |||| |||||||| ||||||||||||    
T  40391280 aataattacattactttttgataaaaactcacttcatttggtgcttaaccaatgcc 40391335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 133
Target Start/End: Original strand, 30627605 - 30627686
Alignment:
Q  51 tgagatactgattaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 133  Q
    ||||| |||||||||||||| ||||||||||| ||| | |||| |||||||||  ||||||||||||| ||||||| ||||||    
T  30627605 tgagacactgattaaggaatctataaatagaa-tttatgtcttggaaatataacctgtcactttttataaagtaatgattaca 30627686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 201
Target Start/End: Complemental strand, 19066911 - 19066858
Alignment:
Q  148 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatg 201  Q
    |||||||||| |||||||||||||||| ||||||||||||| | ||||||||||    
T  19066911 aataattacaatactttttaataaaaatttactttatttggcgcttaaccaatg 19066858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 201
Target Start/End: Complemental strand, 19114801 - 19114748
Alignment:
Q  148 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatg 201  Q
    |||||||||| |||||||||||||||| ||||||||||||| | ||||||||||    
T  19114801 aataattacaatactttttaataaaaatttactttatttggcgcttaaccaatg 19114748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 148 - 200
Target Start/End: Original strand, 33827887 - 33827939
Alignment:
Q  148 aataattacattactttttaataaaaacttactttatttggtgtttaaccaat 200  Q
    ||||||||||||||||||||||||||| ||| ||||||||||  |||||||||    
T  33827887 aataattacattactttttaataaaaagttattttatttggttcttaaccaat 33827939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 148 - 200
Target Start/End: Complemental strand, 33840078 - 33840026
Alignment:
Q  148 aataattacattactttttaataaaaacttactttatttggtgtttaaccaat 200  Q
    ||||||||||||||||||||||||||| ||| ||||||||||  |||||||||    
T  33840078 aataattacattactttttaataaaaagttattttatttggttcttaaccaat 33840026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 133
Target Start/End: Original strand, 48282887 - 48282962
Alignment:
Q  57 actgattaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 133  Q
    |||| ||||||||| |||||||||||||| || ||||  ||||||||  ||||||||||||| | ||||||||||||    
T  48282887 actggttaaggaatctataaatagaattt-ctgtcttgaaaatataatctgtcactttttatcaggtaataattaca 48282962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 200
Target Start/End: Original strand, 50468869 - 50468921
Alignment:
Q  148 aataattacattactttttaataaaaacttactttatttggtgtttaaccaat 200  Q
    ||||||||||||||||||||||||||| |||||||| ||| |  |||||||||    
T  50468869 aataattacattactttttaataaaaatttactttacttgatacttaaccaat 50468921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 159 - 202
Target Start/End: Original strand, 20359312 - 20359355
Alignment:
Q  159 tactttttaataaaaacttactttatttggtgtttaaccaatgc 202  Q
    |||||||||||||||||||||||||||| | | |||||||||||    
T  20359312 tactttttaataaaaacttactttatttagcgcttaaccaatgc 20359355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 159 - 202
Target Start/End: Complemental strand, 20551658 - 20551615
Alignment:
Q  159 tactttttaataaaaacttactttatttggtgtttaaccaatgc 202  Q
    |||||||||||||||||||||||||||| | | |||||||||||    
T  20551658 tactttttaataaaaacttactttatttagcgcttaaccaatgc 20551615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 225
Target Start/End: Original strand, 30627681 - 30627755
Alignment:
Q  152 attacattactttttaat-aaaaacttactttatttggtgtttaaccaatgcccgagggcactggttaacattct 225  Q
    |||||||||||||||||| ||||| ||||||   |||||| ||||||||||| |  |||||| ||||||||||||    
T  30627681 attacattactttttaattaaaaatttacttctcttggtgcttaaccaatgcacctgggcaccggttaacattct 30627755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 152 - 201
Target Start/End: Original strand, 18910471 - 18910520
Alignment:
Q  152 attacattactttttaataaaaacttactttatttggtgtttaaccaatg 201  Q
    ||||||||||||||||||||||| ||| ||  |||||||||||| |||||    
T  18910471 attacattactttttaataaaaatttatttcttttggtgtttaatcaatg 18910520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 133
Target Start/End: Original strand, 20471328 - 20471403
Alignment:
Q  57 actgattaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 133  Q
    |||| ||||| ||| |||||||| |||| | | ||||||||||||||| ||||||||||||| ||  ||||||||||    
T  20471328 actggttaagaaatctataaatataattgt-tgtcttagaaatataaactgtcactttttatcaaaaaataattaca 20471403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 133
Target Start/End: Complemental strand, 20560209 - 20560134
Alignment:
Q  57 actgattaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 133  Q
    |||| ||||| ||| |||||||| |||| | | ||||||||||||||| ||||||||||||| ||  ||||||||||    
T  20560209 actggttaagaaatctataaatataattgt-tgtcttagaaatataaactgtcactttttatcaaaaaataattaca 20560134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 148 - 229
Target Start/End: Complemental strand, 43862992 - 43862910
Alignment:
Q  148 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatgcccga-gggcactggttaacattctcctt 229  Q
    |||||||||||||||||||||||||||||||||| |||||| | ||||||||||||| | |||||| ||||||||||||||||    
T  43862992 aataattacattactttttaataaaaacttacttcatttggggcttaaccaatgccccaggggcaccggttaacattctcctt 43862910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 150 - 231
Target Start/End: Complemental strand, 43014694 - 43014611
Alignment:
Q  150 taattacattactttttaataaaaacttactttatttggtgtttaaccaatgccc--gagggcactggttaacattctccttat 231  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||   ||||||||| ||||||||||||||||    
T  43014694 taattacattactttttaacaaaaacttactttatttggtgcttaatcaatgccccgaagggcactgattaacattctccttat 43014611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 148 - 227
Target Start/End: Original strand, 44291292 - 44291372
Alignment:
Q  148 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatg-cccgagggcactggttaacattctcc 227  Q
    ||||||||||||||||||||||||| ||||||||  ||||||| |||||||||| |||| |||||||||||||||||||||    
T  44291292 aataattacattactttttaataaatacttacttcttttggtgcttaaccaatgccccgggggcactggttaacattctcc 44291372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 150 - 228
Target Start/End: Original strand, 23208206 - 23208285
Alignment:
Q  150 taattacattactttttaataaaaacttactttatttggtgtttaaccaatg-cccgagggcactggttaacattctcct 228  Q
    |||||||||||||||||||||||||| || |||||||||| ||||||||||| |||| |||||| |||||||||||||||    
T  23208206 taattacattactttttaataaaaacgtattttatttggtatttaaccaatgtcccgggggcaccggttaacattctcct 23208285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 148 - 229
Target Start/End: Original strand, 42163669 - 42163751
Alignment:
Q  148 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatg-cccgagggcactggttaacattctcctt 229  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||  ||||| ||||||||||| ||||    
T  42163669 aataattacattactttttaataaaaacttacttcatttggtgtgtaaccaatgccccggaggcaccggttaacattcccctt 42163751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 28 - 133
Target Start/End: Complemental strand, 27144146 - 27144041
Alignment:
Q  28 tgggtcttgttaacagatgctcctgagatactgattaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaata 127  Q
    |||||||||||||| | ||| |  |||  |||| ||||| ||| ||||||||||||||||| | ||||||||||||| ||| ||||||||||||||||||    
T  27144146 tgggtcttgttaaccggtgccctcgaggcactggttaagaaatctataaatagaattttctgtattagaaatataaactgtgactttttattaagtaata 27144047  T
Q  128 attaca 133  Q
    ||||||    
T  27144046 attaca 27144041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 148 - 233
Target Start/End: Original strand, 32720583 - 32720668
Alignment:
Q  148 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatgcccgagggcactggttaacattctccttattt 233  Q
    |||||||| |||| |||||||||||||||||||| |||| ||| ||||||||| | | ||||||||| ||||||||||||||||||    
T  32720583 aataattatattattttttaataaaaacttacttaatttagtgcttaaccaatactccagggcactgattaacattctccttattt 32720668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 152 - 227
Target Start/End: Complemental strand, 36258725 - 36258648
Alignment:
Q  152 attacattacttttt-aataaaaacttactttatttggtgtttaaccaatgcccgagg-gcactggttaacattctcc 227  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||| ||||| |||||||||||||    
T  36258725 attacattacttttttaataaaaacttactttatttggtgtttaacccatgccctaggagcactcgttaacattctcc 36258648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 57 - 133
Target Start/End: Original strand, 42163602 - 42163678
Alignment:
Q  57 actgattaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 133  Q
    |||| ||||||||| ||| ||||||||||||| |||| ||||||||||  |||||||||||||||||||||||||||    
T  42163602 actggttaaggaatctattaatagaattttctgtcttggaaatataaaccgtcactttttattaagtaataattaca 42163678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 57 - 133
Target Start/End: Original strand, 44041320 - 44041396
Alignment:
Q  57 actgattaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 133  Q
    |||| |||| |||| ||||||||||||||||| |||| | |||||||| ||||||||||||||||||||||||||||    
T  44041320 actggttaatgaatctataaatagaattttctgtcttggtaatataaactgtcactttttattaagtaataattaca 44041396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 57 - 133
Target Start/End: Original strand, 44291226 - 44291301
Alignment:
Q  57 actgattaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 133  Q
    |||| ||||||||| |||||||||||||| || |||| |||||||||| ||||||||||||||||||||||||||||    
T  44291226 actggttaaggaatctataaatagaattt-ctgtcttggaaatataaactgtcactttttattaagtaataattaca 44291301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 73 - 133
Target Start/End: Original strand, 49419063 - 49419123
Alignment:
Q  73 ataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 133  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||    
T  49419063 ataaatagaattttctgtattagaaatataaattgtcactttttattaactaataattaca 49419123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 148 - 230
Target Start/End: Original strand, 15671179 - 15671262
Alignment:
Q  148 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatgc-ccgagggcactggttaacattctcctta 230  Q
    |||||||||||||||||||||||||||||||||| |||||||  ||||||||||| |||   | ||||||||||||||||||||    
T  15671179 aataattacattactttttaataaaaacttacttcatttggttcttaaccaatgctccgtatgtactggttaacattctcctta 15671262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 62 - 133
Target Start/End: Original strand, 17109535 - 17109606
Alignment:
Q  62 ttaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 133  Q
    ||||| ||||||||||||||||||||| |||| |||||||||| ||| || |||||||||||||||||||||    
T  17109535 ttaagaaatttataaatagaattttctatcttggaaatataaactgtaacattttattaagtaataattaca 17109606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 72 - 133
Target Start/End: Complemental strand, 36258781 - 36258720
Alignment:
Q  72 tataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 133  Q
    ||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||| ||||||    
T  36258781 tataaatagaattttctgtcttagaaatataaaatgtcattttttattaagtaatcattaca 36258720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 148 - 228
Target Start/End: Original strand, 43652531 - 43652612
Alignment:
Q  148 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatg-cccgagggcactggttaacattctcct 228  Q
    |||||||||||||||||||| || |||||||||| |||||||| |||||  ||| ||||| |||||||||||||||||||||    
T  43652531 aataattacattactttttagtagaaacttacttcatttggtgcttaacggatgtcccgaaggcactggttaacattctcct 43652612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 148 - 225
Target Start/End: Complemental strand, 27144050 - 27143974
Alignment:
Q  148 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatgcccgagggcactggttaacattct 225  Q
    ||||||||||||| ||||||||||||||||| || ||||| || |||||||||||| | ||||| |||||||||||||    
T  27144050 aataattacattattttttaataaaaacttagttcatttgttgcttaaccaatgcctg-gggcattggttaacattct 27143974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 57 - 133
Target Start/End: Original strand, 15671113 - 15671188
Alignment:
Q  57 actgattaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 133  Q
    |||| ||||||||| |||||||| |||||| | |||| |||||||||| ||||||||||||| ||||||||||||||    
T  15671113 actggttaaggaatctataaataaaatttt-tgtcttcgaaatataaactgtcactttttatcaagtaataattaca 15671188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 126
Target Start/End: Original strand, 23208145 - 23208209
Alignment:
Q  62 ttaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaat 126  Q
    ||||| ||| ||||||||||||||||| ||||  ||||||||| |||||||||||||||||||||    
T  23208145 ttaagaaatctataaatagaattttctgtcttgaaaatataaactgtcactttttattaagtaat 23208209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 131
Target Start/End: Original strand, 32720523 - 32720590
Alignment:
Q  64 aaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataatta 131  Q
    ||||||| ||| ||||||||||||| ||||  ||||||||| ||||||| ||||||||||||||||||    
T  32720523 aaggaatctattaatagaattttctttcttgaaaatataaactgtcactatttattaagtaataatta 32720590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 148 - 230
Target Start/End: Complemental strand, 52992495 - 52992414
Alignment:
Q  148 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatgcccgagggcactggttaacattctcctta 230  Q
    ||||||||||||| |||||  |||||| ||||||||||||||| ||||||||||  || ||  ||||||||||||||||||||    
T  52992495 aataattacattattttttggtaaaaaattactttatttggtgcttaaccaatg-tcggggttactggttaacattctcctta 52992414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 127
Target Start/End: Complemental strand, 43014760 - 43014696
Alignment:
Q  62 ttaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaata 127  Q
    |||| ||||||||||||| |||||||| |||| ||||||||||||||||| ||||||| |||||||    
T  43014760 ttaaagaatttataaatataattttctgtcttggaaatataaattgtcac-ttttatttagtaata 43014696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 195
Target Start/End: Original strand, 17109597 - 17109644
Alignment:
Q  148 aataattacattactttttaataaaaacttactttatttggtgtttaa 195  Q
    ||||||||||| ||||||||||||||| ||||||||||| ||||||||    
T  17109597 aataattacataactttttaataaaaatttactttatttagtgtttaa 17109644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 222
Target Start/End: Complemental strand, 49710996 - 49710921
Alignment:
Q  148 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatgc-ccgagggcactggttaacat 222  Q
    |||||||| |||| ||||||||||||||||| ||||||||||| |||| |||||| |||  |||| ||||||||||    
T  49710996 aataattatattaatttttaataaaaacttattttatttggtgcttaatcaatgctccggaggcaatggttaacat 49710921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 148 - 190
Target Start/End: Complemental strand, 35322060 - 35322018
Alignment:
Q  148 aataattacattactttttaataaaaacttactttatttggtg 190  Q
    ||||||||||||||||||||||||||||||||||  |||||||    
T  35322060 aataattacattactttttaataaaaacttacttcttttggtg 35322018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 72 - 133
Target Start/End: Complemental strand, 35322109 - 35322051
Alignment:
Q  72 tataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 133  Q
    ||||||||||||||| |||  |||||||||||| | ||||||||||||||||||||||||||    
T  35322109 tataaatagaattttgtct--tagaaatataaact-tcactttttattaagtaataattaca 35322051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 133
Target Start/End: Complemental strand, 43863032 - 43862983
Alignment:
Q  84 tttctctcttagaaatataaattgtcactttttattaagtaataattaca 133  Q
    ||||| |||| |||||||||| ||||||| ||||||||||||||||||||    
T  43863032 tttctgtcttggaaatataaactgtcactctttattaagtaataattaca 43862983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 229
Target Start/End: Original strand, 49419114 - 49419195
Alignment:
Q  148 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatgcccgagg-gcactggttaacattctcctt 229  Q
    ||||||||||| |||||||||| |||| | | |||| |||||||||||| ||||||| ||| |||  ||||||||||||||||    
T  49419114 aataattacataactttttaat-aaaattgattttacttggtgtttaacgaatgccctaggagcatcggttaacattctcctt 49419195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 131
Target Start/End: Complemental strand, 49711061 - 49710989
Alignment:
Q  57 actgattaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataatta 131  Q
    |||| ||||||||| ||||||||||| ||||| ||||||||||||||| ||| | |||||| ||| |||||||||    
T  49711061 actggttaaggaatctataaatagaa-tttctgtcttagaaatataaaatgttatttttta-taaataataatta 49710989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 133
Target Start/End: Original strand, 43652437 - 43652540
Alignment:
Q  29 gggtcttgttaacagatgctcctgagatactgattaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataa 128  Q
    |||| |||||||| |||||||  |||  | |||||||||||| |||||||| || ||||| |||| |||||||||  ||||| ||||||| |  ||||||    
T  43652437 gggttttgttaaccgatgctctcgaggcattgattaaggaatctataaata-aaatttctatcttggaaatataatctgtcattttttatcagataataa 43652535  T
Q  129 ttaca 133  Q
    |||||    
T  43652536 ttaca 43652540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 148 - 229
Target Start/End: Complemental strand, 38852 - 38771
Alignment:
Q  148 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatgcccgagggcactggttaacattctcctt 229  Q
    ||||||||||||||||||||||||||||||| |||||||| |  ||||||||||| | || |||||||||||||||||||||    
T  38852 aataattacattactttttaataaaaacttattttatttgattcttaaccaatgctccagagcactggttaacattctcctt 38771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 72 - 133
Target Start/End: Complemental strand, 38903 - 38843
Alignment:
Q  72 tataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 133  Q
    ||||||||||||||  | |||| |||||||||| ||||| ||||||| ||||||||||||||    
T  38903 tataaatagaattta-tatcttggaaatataaactgtcattttttatcaagtaataattaca 38843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 32 - 133
Target Start/End: Original strand, 31241923 - 31242023
Alignment:
Q  32 tcttgttaacagatgctcctgagatactgattaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataatta 131  Q
    |||||||||| ||||| || ||||||||| ||||||||| ||||||||||||||||| ||||  |||||||||  ||||||||||||||| |||||||||    
T  31241923 tcttgttaaccgatgcccc-gagatactggttaaggaatctataaatagaattttctgtcttgaaaatataaacggtcactttttattaaataataatta 31242021  T
Q  132 ca 133  Q
    ||    
T  31242022 ca 31242023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 148 - 233
Target Start/End: Complemental strand, 31647772 - 31647686
Alignment:
Q  148 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatgcc-cgagggcactggttaacattctccttattt 233  Q
    ||||||||||||||||||||||||||||||| ||  ||||||| ||||||||| || || |||||| ||||||||||||||||||||    
T  31647772 aataattacattactttttaataaaaacttatttcttttggtgcttaaccaatacctcgggggcaccggttaacattctccttattt 31647686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 67 - 133
Target Start/End: Original strand, 38320124 - 38320190
Alignment:
Q  67 gaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 133  Q
    |||| ||||||||||||||||| |||| |||||||||| |||||||| |||||||||||||||||||    
T  38320124 gaatctataaatagaattttctgtcttggaaatataaactgtcacttcttattaagtaataattaca 38320190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 57 - 133
Target Start/End: Complemental strand, 31647838 - 31647763
Alignment:
Q  57 actgattaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 133  Q
    ||||||||| |||| |||||||||||||| || ||||||||||||||| | ||||||||||| ||||||||||||||    
T  31647838 actgattaaagaatctataaatagaattt-ctgtcttagaaatataaactatcactttttatcaagtaataattaca 31647763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 227
Target Start/End: Original strand, 38320181 - 38320261
Alignment:
Q  148 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatg-cccgagggcactggttaacattctcc 227  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||| |||| | |  | |||||||||||||||||||    
T  38320181 aataattacattactttttaataaaaacttactttatttgatgcttaactaatgtctctggcgcactggttaacattctcc 38320261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 152 - 227
Target Start/End: Original strand, 20542717 - 20542792
Alignment:
Q  152 attacattactttttaataaaaacttactttatttggtgtttaaccaatgcccgagggcactggttaacattctcc 227  Q
    |||| |||||||||||||||||||||| ||  ||||||| |||||||||||||  ||||||| |||||||||||||    
T  20542717 attatattactttttaataaaaacttaattcttttggtgcttaaccaatgccccggggcactagttaacattctcc 20542792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 62 - 127
Target Start/End: Original strand, 38319541 - 38319606
Alignment:
Q  62 ttaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaata 127  Q
    ||||||||| ||||||||||||||||| | ||  ||||||||| ||||||||||||||||||||||    
T  38319541 ttaaggaatctataaatagaattttctgttttgaaaatataaactgtcactttttattaagtaata 38319606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 57 - 131
Target Start/End: Complemental strand, 47397722 - 47397649
Alignment:
Q  57 actgattaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataatta 131  Q
    |||| ||||||||| |||||||||||||| || | ||||||||||||| ||||||||||||| || |||||||||    
T  47397722 actggttaaggaatctataaatagaattt-ctattttagaaatataaactgtcactttttatcaaataataatta 47397649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 200
Target Start/End: Original strand, 19147210 - 19147262
Alignment:
Q  148 aataattacattactttttaataaaaacttactttatttggtgtttaaccaat 200  Q
    |||||||||||||||| |||||||||||||||||  ||||||| |||| ||||    
T  19147210 aataattacattacttattaataaaaacttacttcttttggtgcttaatcaat 19147262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 62 - 133
Target Start/End: Original strand, 16341103 - 16341173
Alignment:
Q  62 ttaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 133  Q
    |||||||||||| ||||| |||||| | |||| |||||||||| ||| |||||| |||||||||| ||||||    
T  16341103 ttaaggaatttacaaataaaatttt-tgtctttgaaatataaaatgttacttttgattaagtaatgattaca 16341173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 133
Target Start/End: Original strand, 19147144 - 19147219
Alignment:
Q  57 actgattaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 133  Q
    |||| ||||| ||| ||||| |||||||| || ||||  ||||||||| ||||||||||||| || |||||||||||    
T  19147144 actggttaagaaatctataagtagaattt-ctgtcttgaaaatataaactgtcactttttatcaaataataattaca 19147219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 148 - 228
Target Start/End: Original strand, 8117506 - 8117587
Alignment:
Q  148 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatg-cccgagggcactggttaacattctcct 228  Q
    |||||||||||||||||||||||||||||||||| |||| | |||||||||||| |||| || ||||| |||||||||||||    
T  8117506 aataattacattactttttaataaaaacttacttcatttagcgtttaaccaatgccccggggtcactgattaacattctcct 8117587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 57 - 133
Target Start/End: Complemental strand, 22035850 - 22035774
Alignment:
Q  57 actgattaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 133  Q
    |||| |||| |||| ||||||||||||||||| |||| |||||||||| |||||||||||| |||||||||||||||    
T  22035850 actggttaatgaatctataaatagaattttctgtcttggaaatataaactgtcactttttaataagtaataattaca 22035774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 148 - 202
Target Start/End: Original strand, 36636070 - 36636124
Alignment:
Q  148 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatgc 202  Q
    ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  36636070 aataattacattattttttaataaaaacttactttatttggtgcttaaccaatgc 36636124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 200
Target Start/End: Original strand, 16563532 - 16563584
Alignment:
Q  148 aataattacattactttttaataaaaacttactttatttggtgtttaaccaat 200  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  16563532 aataattacattactttttaataaaaacttaatttatttagtgtttaaccaat 16563584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 200
Target Start/End: Complemental strand, 16602130 - 16602078
Alignment:
Q  148 aataattacattactttttaataaaaacttactttatttggtgtttaaccaat 200  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  16602130 aataattacattactttttaataaaaacttaatttatttagtgtttaaccaat 16602078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 148 - 230
Target Start/End: Original strand, 45907096 - 45907179
Alignment:
Q  148 aataattacattactttttaataaaaacttactttatttggtgtttaaccaat-gcccgagggcactggttaacattctcctta 230  Q
    ||||||||||||||||||||||||||||||||||  |||  || |||||||||  |||| || |||||||||||||||||||||    
T  45907096 aataattacattactttttaataaaaacttacttctttttatgcttaaccaatatcccggggacactggttaacattctcctta 45907179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 133
Target Start/End: Original strand, 36636009 - 36636079
Alignment:
Q  62 ttaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 133  Q
    |||||||||| |||||||||||||||| |||| || |||||||  ||||| |||||||||||||||||||||    
T  36636009 ttaaggaatt-ataaatagaattttctatcttggagatataaacggtcaccttttattaagtaataattaca 36636079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 197
Target Start/End: Complemental strand, 19689550 - 19689502
Alignment:
Q  148 aataattacattactttttaataaaaacttactttatttggtgtttaacc 197  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  19689550 aataattacattactttttaat-aaaacttacttcatttggtgtttaacc 19689502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 29 - 133
Target Start/End: Complemental strand, 19689645 - 19689541
Alignment:
Q  29 gggtcttgttaacagatgctcctgagatactgattaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataa 128  Q
    ||||||||||||| | |||  | |||| |||||||||||||| |||||||| || ||||| ||||  ||||||||| | ||||||  |||||| ||||||    
T  19689645 gggtcttgttaaccggtgcctccgagacactgattaaggaatctataaatacaactttctatcttgtaaatataaactatcacttcgtattaaataataa 19689546  T
Q  129 ttaca 133  Q
    |||||    
T  19689545 ttaca 19689541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 61 - 133
Target Start/End: Complemental strand, 41434814 - 41434743
Alignment:
Q  61 attaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 133  Q
    ||||| |||| |||||||| ||||| || ||||||||||||||| ||||||||||||| || |||||||||||    
T  41434814 attaaagaatctataaatataattt-ctgtcttagaaatataaactgtcactttttatcaaataataattaca 41434743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 133
Target Start/End: Original strand, 45907035 - 45907105
Alignment:
Q  62 ttaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 133  Q
    ||||||||| |||||||||| |||| | ||||  ||||||||| ||||||||||||| ||||||||||||||    
T  45907035 ttaaggaatctataaatagattttt-tgtcttgtaaatataaactgtcactttttatcaagtaataattaca 45907105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 188
Target Start/End: Complemental strand, 22035783 - 22035743
Alignment:
Q  148 aataattacattactttttaataaaaacttactttatttgg 188  Q
    ||||||||||||| |||||||||||||||||||| ||||||    
T  22035783 aataattacattattttttaataaaaacttacttcatttgg 22035743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 228
Target Start/End: Original strand, 26203126 - 26203162
Alignment:
Q  192 ttaaccaatgcccgagggcactggttaacattctcct 228  Q
    |||||||||||||| ||||||||||||||||||||||    
T  26203126 ttaaccaatgcccgggggcactggttaacattctcct 26203162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 229
Target Start/End: Complemental strand, 41434752 - 41434673
Alignment:
Q  148 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatgc-ccgagggcactggttaacattctcctt 229  Q
    ||||||||||||| ||||||||||||| |||||   ||| ||||||||||||||| ||| | ||  |||||||||||||||||    
T  41434752 aataattacattattttttaataaaaatttact---tttagtgtttaaccaatgctccgggagccttggttaacattctcctt 41434673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 148 - 226
Target Start/End: Complemental strand, 21798848 - 21798770
Alignment:
Q  148 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatgcccgag-ggcactggttaacattctc 226  Q
    |||||||||||||||| |||||||||| ||||||  ||||||| |||||||| ||||  | ||||||| |||||||||||    
T  21798848 aataattacattacttcttaataaaaa-ttacttcttttggtgcttaaccaaagcccccgcggcactgtttaacattctc 21798770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 229
Target Start/End: Original strand, 7833817 - 7833889
Alignment:
Q  159 tactttttaataaaaacttactttatttgg-tgtttaaccaatgccc-gagggcactggttaacattctcctt 229  Q
    ||||||||||||||| |||||||  ||||| || |||||||||||||   ||||| |||||||||||||||||    
T  7833817 tactttttaataaaatcttacttgttttggctgcttaaccaatgccctcggggcattggttaacattctcctt 7833889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 200
Target Start/End: Complemental strand, 52063 - 52011
Alignment:
Q  148 aataattacattactttttaataaaaacttactttatttggtgtttaaccaat 200  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  52063 aataattacattactttttaataaaaacttactttatttagcgtttaaccaat 52011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 62 - 133
Target Start/End: Complemental strand, 52124 - 52054
Alignment:
Q  62 ttaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 133  Q
    ||||| ||| ||||||||||||| | | ||||||||||||||||||||| ||||||  || |||||||||||    
T  52124 ttaagaaatctataaatagaattgt-tgtcttagaaatataaattgtcattttttaccaaataataattaca 52054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 62 - 133
Target Start/End: Original strand, 862 - 933
Alignment:
Q  62 ttaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 133  Q
    ||||||||| ||||||||||||||||| |||| |||||||||| | ||| |||||||||| |||||||||||    
T  862 ttaaggaatctataaatagaattttctgtcttggaaatataaactatcattttttattaaataataattaca 933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 199
Target Start/End: Original strand, 924 - 975
Alignment:
Q  148 aataattacattactttttaataaaaacttactttatttggtgtttaaccaa 199  Q
    |||||||||||||| || ||||||||| ||||||||||| ||||||||||||    
T  924 aataattacattacattctaataaaaatttactttatttagtgtttaaccaa 975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 57 - 132
Target Start/End: Original strand, 21809802 - 21809876
Alignment:
Q  57 actgattaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattac 132  Q
    |||| ||||| ||| ||||||||||||| | | ||||||||||||||||||||||||||||| |||||||||||||    
T  21809802 actggttaagaaatctataaatagaattgt-tgtcttagaaatataaattgtcactttttatcaagtaataattac 21809876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 148 - 229
Target Start/End: Complemental strand, 17506317 - 17506233
Alignment:
Q  148 aataattacattactttttaata--aaaacttactttatttggtgtttaaccaatgcccgag-ggcactggttaacattctcctt 229  Q
    |||||||||||||||||||||||  |||| ||||||  |||||||  ||||||||||||||| ||||| ||||||||||||||||    
T  17506317 aataattacattactttttaataaaaaaaattacttcttttggtgcctaaccaatgcccgagaggcaccggttaacattctcctt 17506233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 148 - 202
Target Start/End: Original strand, 21809868 - 21809922
Alignment:
Q  148 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatgc 202  Q
    ||||||||| ||||||||||||||||||||| ||||||| | | |||||||||||    
T  21809868 aataattacgttactttttaataaaaacttattttatttagcgcttaaccaatgc 21809922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 133
Target Start/End: Complemental strand, 17506412 - 17506308
Alignment:
Q  28 tgggtcttgttaacagatgctcctgagatactgattaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaata 127  Q
    ||||||||||||||   |||||| |||  |||| ||||| ||| |||||||| |||||  | | || |||||||||| ||||||||||||| ||||||||    
T  17506412 tgggtcttgttaaccagtgctccggaggcactggttaagaaatctataaatataattta-tattttggaaatataaactgtcactttttatcaagtaata 17506314  T
Q  128 attaca 133  Q
    ||||||    
T  17506313 attaca 17506308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 204
Target Start/End: Complemental strand, 4803206 - 4803150
Alignment:
Q  148 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatgccc 204  Q
    |||||||||||||||||||| |||||| ||||||  ||||||| |||||| ||||||    
T  4803206 aataattacattactttttagtaaaaatttacttcttttggtgcttaaccgatgccc 4803150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 10008244 - 10008171
Alignment:
Q  148 aataattacattactttttaataaaaacttactttatttgg-tgtttaaccaatgcccgagggcactggttaac 220  Q
    ||||||||||  ||||||||||||||||||||||  ||||| || |||||||||| |  ||||||||| |||||    
T  10008244 aataattacaccactttttaataaaaacttacttcttttggttgcttaaccaatgtcttagggcactgtttaac 10008171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0886 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: scaffold0886
Description:

Target: scaffold0886; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 68 - 133
Target Start/End: Original strand, 1112 - 1176
Alignment:
Q  68 aatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 133  Q
    ||||||||||||||||||| | ||||  ||||||||| ||||||||||||||||||||||||||||    
T  1112 aatttataaatagaatttttt-tcttgaaaatataaactgtcactttttattaagtaataattaca 1176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0886; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 200
Target Start/End: Original strand, 1167 - 1219
Alignment:
Q  148 aataattacattactttttaataaaaacttactttatttggtgtttaaccaat 200  Q
    |||||||||||||||||||||||||| |||| |||||||| |  |||||||||    
T  1167 aataattacattactttttaataaaagcttattttatttgattcttaaccaat 1219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 148 - 228
Target Start/End: Original strand, 22486 - 22567
Alignment:
Q  148 aataattacattactttttaataaaaacttactttatttggtgtttaaccaatgcc-cgagggcactggttaacattctcct 228  Q
    ||||||||||||||| ||||||||||||||||||  ||||||| |||||||||||| || ||| |||  |||||||||||||    
T  22486 aataattacattactctttaataaaaacttacttcttttggtgcttaaccaatgcctcgggggtactttttaacattctcct 22567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 133
Target Start/End: Original strand, 22420 - 22495
Alignment:
Q  57 actgattaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 133  Q
    |||||||||||||| |||||||| || ||| | | || ||||||||||  |||||||||||| || |||||||||||    
T  22420 actgattaaggaatctataaatataacttt-tgtgttggaaatataaaccgtcactttttatcaaataataattaca 22495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1372 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold1372
Description:

Target: scaffold1372; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 118
Target Start/End: Original strand, 1272 - 1327
Alignment:
Q  62 ttaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttat 118  Q
    ||||||||| |||||||||||||| || |||| |||||||||| |||||||||||||    
T  1272 ttaaggaatctataaatagaattt-ctgtcttggaaatataaactgtcactttttat 1327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1372; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 148 - 181
Target Start/End: Original strand, 1344 - 1377
Alignment:
Q  148 aataattacattactttttaataaaaacttactt 181  Q
    |||||||||||| |||||||||||||||||||||    
T  1344 aataattacatttctttttaataaaaacttactt 1377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 62 - 133
Target Start/End: Complemental strand, 51758 - 51688
Alignment:
Q  62 ttaaggaatttataaatagaattttctctcttagaaatataaattgtcactttttattaagtaataattaca 133  Q
    |||||||||||| ||||| |||||| | |||| |||||||||| ||| |||||| |||||||||| ||||||    
T  51758 ttaaggaatttacaaataaaatttt-tgtctttgaaatataaaatgttacttttgattaagtaatgattaca 51688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 86
Target Start/End: Original strand, 15359 - 15391
Alignment:
Q  54 gatactgattaaggaatttataaatagaatttt 86  Q
    |||| ||||||||||||||||||||||||||||    
T  15359 gataatgattaaggaatttataaatagaatttt 15391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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