View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14300_high_4 (Length: 723)
Name: NF14300_high_4
Description: NF14300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14300_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 664; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 664; E-Value: 0
Query Start/End: Original strand, 17 - 712
Target Start/End: Complemental strand, 9630197 - 9629502
Alignment:
| Q |
17 |
cctatttcgtttggtaatcgaccgcccaaaagggtatcttggaaaagaagattcctgatactgataagcccagttctgggcttatcagtgccatcaggaa |
116 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
9630197 |
cctatttcgtttggtaatcgaccgcccaaaagggtatcttggaaaagtagattcctgatactgataagcccagaactgggcttatcagtgccatcaggaa |
9630098 |
T |
|
| Q |
117 |
acaaacgacggtctaatataccagacacgtcgtttcttgaaacatcaagctcataaacttgagtcaaattagcaatagaaagaggcaaagttccattgag |
216 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
9630097 |
acaaacgacggtctaatataccagacacatcgtttcttgaaacatcaagctcataaacttgagtcaaattagctatagaaagaggcaaagttccattgag |
9629998 |
T |
|
| Q |
217 |
ataatttgtagaaagatcaagaaattgaagtttcgaaagaacgccgatgttttcaggtataacaccggtgagattgtttgttttaagatcaagacgaaca |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9629997 |
ataatttgtagaaagatcaagaaattgaagtttcgaaagaacaccgatgttttcaggtataacaccggtgagattgtttgttttaagatcaagacgaaca |
9629898 |
T |
|
| Q |
317 |
aggttaggaaaaaccgacaaatttaagtgattaagagtaccttcaagtccagtatatgccaagtttatgattgtaacacttcctttagaatcatcacaag |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9629897 |
aggttaggaaaaaccgacaaatttaagtgattaagagtaccttcaagtccagtatatgccaagtttatgattgtaacacttcctttagaatcatcacaag |
9629798 |
T |
|
| Q |
417 |
tgatacctctccatgaacatggtgtttgtgttgaactagagttgttaatgatccatgaatcaagaattggttgttgagggagactttgtttccactttaa |
516 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9629797 |
tgatacctctccataaacatggtgtttgtgttgaactagagttgttaatgatccatgaatcaagaattggttgttgagggagactttgtttccactttaa |
9629698 |
T |
|
| Q |
517 |
caaggcttcaaattgtgtcagtcctgaagtgatttggcatagagctagcaacaaagaaaccaacaaagtagcttgaattggaaatgtatgcatatggtta |
616 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9629697 |
caaggcttcaaattgtgtcagtcctgaagtgatttggcatagagctagcaacaaagaaaccaacaaagtagcttgaattggaaatgtatgcatatggtta |
9629598 |
T |
|
| Q |
617 |
aggttggacattgtgtgatgatcacaaaattctgaaaatggtttctttaattgttttatttgttcaatgaagtgttgttgtatttatgagtataat |
712 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
9629597 |
aggttggacattgtgtgatgatcacaaaattctgaaaatggtttctttaattgttttatttgttcaatgaagtgttgttgtatttatgattataat |
9629502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 105
Target Start/End: Original strand, 9630109 - 9630138
Alignment:
| Q |
76 |
actgataagcccagttctgggcttatcagt |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
9630109 |
actgataagcccagttctgggcttatcagt |
9630138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 624; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 624; E-Value: 0
Query Start/End: Original strand, 17 - 712
Target Start/End: Original strand, 13607049 - 13607744
Alignment:
| Q |
17 |
cctatttcgtttggtaatcgaccgcccaaaagggtatcttggaaaagaagattcctgatactgataagcccagttctgggcttatcagtgccatcaggaa |
116 |
Q |
| |
|
|||| |||||| ||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
13607049 |
cctaattcgttaggtaatcgaccgcccaaaaagatatcttggaaaagtagattcctgatactgataagcccagaactgggcttatcagtgccatcaggaa |
13607148 |
T |
|
| Q |
117 |
acaaacgacggtctaatataccagacacgtcgtttcttgaaacatcaagctcataaacttgagtcaaattagcaatagaaagaggcaaagttccattgag |
216 |
Q |
| |
|
|||||||| |||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13607149 |
acaaacgaaggtctaatataccagaaacatcgtttcatgaaacatcaagctcataaacttgagtcaaattagcaatagaaagaggcaaagttccattgag |
13607248 |
T |
|
| Q |
217 |
ataatttgtagaaagatcaagaaattgaagtttcgaaagaacgccgatgttttcaggtataacaccggtgagattgtttgttttaagatcaagacgaaca |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
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|
| T |
13607249 |
ataatttgtagaaagatcaagaaattgaagtttcgaaagaacaccgatgttttcaggtataacaccggtgagattgtttgatttaagatcaagacgaaaa |
13607348 |
T |
|
| Q |
317 |
aggttaggaaaaaccgacaaatttaagtgattaagagtaccttcaagtccagtatatgccaagtttatgattgtaacacttcctttagaatcatcacaag |
416 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13607349 |
aggttaggaaaaacagacaaatttaagtgattaagagtaccttcaagtccagtaaatgccaagtttatgattgtaacacttcctttagaatcatcacaag |
13607448 |
T |
|
| Q |
417 |
tgatacctctccatgaacatggtgtttgtgttgaactagagttgttaatgatccatgaatcaagaattggttgttgagggagactttgtttccactttaa |
516 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13607449 |
tgatacctctccataaacatggtgtttgtgttgaactagagttgttaatgatccatgaatcaagaattggttgttgagggagactttgtttccactttaa |
13607548 |
T |
|
| Q |
517 |
caaggcttcaaattgtgtcagtcctgaagtgatttggcatagagctagcaacaaagaaaccaacaaagtagcttgaattggaaatgtatgcatatggtta |
616 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13607549 |
caaggcttcaaattgtgtcagtcctgaagtgatttggcatagagctagcaacaaagaaaccaacaaagtagcttgaattggaaatgtatgcatatggtta |
13607648 |
T |
|
| Q |
617 |
aggttggacattgtgtgatgatcacaaaattctgaaaatggtttctttaattgttttatttgttcaatgaagtgttgttgtatttatgagtataat |
712 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
13607649 |
aggttggacattgtgtgatgatcacaaaattctgaaaatggtttctttaattgttttatttgttcaatgaagtgttgttgtatttatgattataat |
13607744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 17 - 688
Target Start/End: Complemental strand, 13902956 - 13902279
Alignment:
| Q |
17 |
cctatttcgtttggtaatcgaccgcccaaaagggtatcttggaaaagaagattcctgatactgataagcccagttctgggcttatcagtgccatcaggaa |
116 |
Q |
| |
|
|||| |||||| ||||||||||||||||||| | ||||||||||||| ||||||||||| ||||||||||||| ||| | ||||||||||||||||||| |
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|
| T |
13902956 |
cctaattcgttcggtaatcgaccgcccaaaaagttatcttggaaaagtagattcctgatgctgataagcccagaactgagtttatcagtgccatcaggaa |
13902857 |
T |
|
| Q |
117 |
acaaacgacggtctaatataccagacacgtcgtttcttgaaacatcaagctcataaacttgagtcaaattagcaatagaaagaggcaaagttccattgag |
216 |
Q |
| |
|
|||||||| |||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
13902856 |
acaaacgatggtctagtataccagatacgtcgtttcgtgaaacatcaagctcataaacttgagtcatattagcaatagaaagaggcaaagttccattgag |
13902757 |
T |
|
| Q |
217 |
ataatttgtagaaagatcaagaaattgaagtttcgaaagaacgccgatgttttcaggtataacaccggtgagattgtttgttttaagatcaagacgaaca |
316 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||| | |
|
|
| T |
13902756 |
ataatttgtagaaagatcaagaaattggagttttgaaagaacaccgatgttttcaggtatgacaccggtgagattgtttgctttgagatcaagacgaaga |
13902657 |
T |
|
| Q |
317 |
aggttaggaaaaaccgacaaatttaagtgattaagagtaccttcaagtccagtatatgccaagtttatgattgtaacacttcctttagaatcatcacaag |
416 |
Q |
| |
|
||||| |||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13902656 |
aggtttggaaaaactgacaagtttaagtgattaagagtaccttcaagtccagtaaatgccaagtttatgattgtaacacttcctttagaatcatcacaag |
13902557 |
T |
|
| Q |
417 |
tgatacctctccatgaacatggtgtttgtgttgaactagagttgttaatgatccatgaatcaagaattggttgttgagggagactttgtttccactttaa |
516 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13902556 |
tgatacctctccataaacatggtgtttgtgttgaactagagttgttaatgatccatgaatcaagaattggttgttgagggagactttgtttccactttaa |
13902457 |
T |
|
| Q |
517 |
caaggcttcaaattgtgtcagtcctgaagtgatttggcatagagctagcaacaaagaaaccaacaaagtagcttgaattggaaatgtatgca------ta |
610 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| || |
|
|
| T |
13902456 |
caaggcttcaaattgtgtcagccctgaagtgatttggcatagagctagcaacaaagaaaccaatacagtagcttgaattggaaatgtatgcatatgatta |
13902357 |
T |
|
| Q |
611 |
tggttaaggttggacattgtgtgatgatcacaaaattctgaaaatggtttctttaattgttttatttgttcaatgaag |
688 |
Q |
| |
|
|||||||||||||||||||| || |||| |||||| || ||||||| ||||| ||||| ||||||| |||||||||| |
|
|
| T |
13902356 |
tggttaaggttggacattgtttggtgattacaaaactcagaaaatgacttcttcaattgctttatttattcaatgaag |
13902279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 105
Target Start/End: Complemental strand, 13607137 - 13607108
Alignment:
| Q |
76 |
actgataagcccagttctgggcttatcagt |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
13607137 |
actgataagcccagttctgggcttatcagt |
13607108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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