View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14300_high_6 (Length: 622)
Name: NF14300_high_6
Description: NF14300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14300_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 510; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 73 - 590
Target Start/End: Complemental strand, 49164514 - 49163997
Alignment:
| Q |
73 |
tagagattaatccaatcatgaatttattatacctttaacttggacaagtttaggaatgttttgcgatttggagcttgttccaacatcttcacttgcgtca |
172 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49164514 |
tagagattaatccaaccatgaatttattatacctttaacttggacaagtttaggaatgttttgcgatttggagcttgttccaacatcttcacttgcgtca |
49164415 |
T |
|
| Q |
173 |
attctcaatttcttaagtggttgagaacttgaaatttgtgattttggtctactcttcttgtaagaaggttgctcatccaaaatttcaattggattgctct |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49164414 |
attctcaatttcttaagtggttgagaacttgaaatttgtgattttggtctactcttcttgtaagaaggttgctcatccaaaatttcaattggattgctct |
49164315 |
T |
|
| Q |
273 |
gttcatgttgattattaccatcaacacgatattcgatttcaaaagtactcttgtcaaaaatgtaaacctcaaaatgagaggttttctgatattgaaacag |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49164314 |
gttcatgttgattattaccatcaacacgatattcgatttcaaaagtactcttgtcaaaaatgtaaacctcaaaatgagaggttttctgatattgaaacag |
49164215 |
T |
|
| Q |
373 |
caccatgtgaccatgatctaatgaataatgtgtagcaaattccttccaacccctttgaatccaaatatcaccatcctttttagtcaaatgtatttcccat |
472 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49164214 |
caccatgtgaccatgatctaatgaataatgtgtagcaaattccttccaacccctttgaatccaaatatcaccatcctttttagtcaaatgtatttcccat |
49164115 |
T |
|
| Q |
473 |
tctttgacatcgggagtcttgagaaacattggctttgataaatcaccgatatatttctcggtgaaagcatttggaattctctgcagtacattgaaattta |
572 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
49164114 |
tctttgacatcgggagtcttgagaaacattggctttgataaatcaccgatatatttctcagtgaaagcatttggaattctctgcagtacattgaaattta |
49164015 |
T |
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| Q |
573 |
tgttagcatgcatagaaa |
590 |
Q |
| |
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|||||||||||||||||| |
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| T |
49164014 |
tgttagcatgcatagaaa |
49163997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 295 - 422
Target Start/End: Complemental strand, 12880920 - 12880793
Alignment:
| Q |
295 |
aacacgatattcgatttcaaaagtactcttgtcaaaaatgtaaacctcaaaatgagaggttttctgatattgaaacagcaccatgtgaccatgatctaat |
394 |
Q |
| |
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|||| ||||||| |||||||||||||||| || ||| ||||||||||||||||| || |||| | ||||||||||| | |||||| ||||| |||||| |
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| T |
12880920 |
aacatgatattcaatttcaaaagtactctggtaaaatatgtaaacctcaaaatgtgatatttttttatattgaaacaccgtcatgtgtccatggtctaat |
12880821 |
T |
|
| Q |
395 |
gaataatgtgtagcaaattccttccaac |
422 |
Q |
| |
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|||||| ||||||||||||||||||||| |
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|
| T |
12880820 |
gaataacgtgtagcaaattccttccaac |
12880793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 342 - 500
Target Start/End: Complemental strand, 12873905 - 12873747
Alignment:
| Q |
342 |
caaaatgagaggttttctgatattgaaacagcaccatgtgaccatgatctaatgaataatgtgtagcaaattccttccaacccctttgaatccaaatatc |
441 |
Q |
| |
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||||||||||| ||| | ||||||||| | |||||||| |||||||||| |||||||| |||||||||||| ||||||||| |||||| ||||||||| |
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| T |
12873905 |
caaaatgagagttttcttcatattgaaataataccatgtgcccatgatctagtgaataatatgtagcaaattctttccaacccttttgaaaccaaatatc |
12873806 |
T |
|
| Q |
442 |
accatcctttttagtcaaatgtatttcccattctttgacatcgggagtcttgagaaaca |
500 |
Q |
| |
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|||| |||||||| |||||||||| |||| |||| |||||||||||||||| |
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|
| T |
12873805 |
cccattgattttagtcgtgcacatttcccattttttgccatctggagtcttgagaaaca |
12873747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 143 - 197
Target Start/End: Complemental strand, 12874131 - 12874077
Alignment:
| Q |
143 |
gagcttgttccaacatcttcacttgcgtcaattctcaatttcttaagtggttgag |
197 |
Q |
| |
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||||||||||||||| ||||||||| |||| |||||||||||||| ||||||||| |
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|
| T |
12874131 |
gagcttgttccaacaccttcacttgagtcacttctcaatttcttatgtggttgag |
12874077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 73 - 559
Target Start/End: Complemental strand, 43750980 - 43750494
Alignment:
| Q |
73 |
tagagattaatccaatcatgaatttattatacctttaacttggacaagtttaggaatgttttgcgatttggagcttgttccaacatcttcacttgcgtca |
172 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||| | |||| | ||||||||||||||||||| |||| |||||| || |
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| T |
43750980 |
tagagattaatccaatcaagaattttttatacctttaacttggacaagtttaggattttttttcaatttggagcttgttccaacgtctttgcttgcgcca |
43750881 |
T |
|
| Q |
173 |
attctcaatttcttaagtggttgagaacttgaaatttgtgattttggtctactcttcttgtaagaaggttgctcatccaaaatttcaattggattgctct |
272 |
Q |
| |
|
|||||| |||||||| |||||||| ||||||||||||||||||||||||| |||||||| | | ||||| ||||||||| |||||| | ||| ||| |
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|
| T |
43750880 |
attctcgatttcttatgtggttgaagacttgaaatttgtgattttggtctagtcttcttgcatgtaggtttttcatccaaattttcaacgaggttgttct |
43750781 |
T |
|
| Q |
273 |
gttcatgttgattattaccatcaacacgatattcgatttcaaaagtactcttgtcaaaaatgtaaacctcaaaatgagaggttttctgatattgaaacag |
372 |
Q |
| |
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| |||||||||||||| |||||||| ||||||| ||||| ||||||||||||| ||| ||||||| || ||||||||| ||||| | ||||||||||| |
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| T |
43750780 |
gctcatgttgattatttccatcaacgtgatattcaatttccaaagtactcttgttaaatatgtaaatcttaaaatgagatgttttttcatattgaaacat |
43750681 |
T |
|
| Q |
373 |
caccatgtgaccatgatctaatgaataatgtgtagcaaattccttccaacccctttgaatccaaatatcaccatcctttttagtcaaatgtatttcccat |
472 |
Q |
| |
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|| |||||| |||||||||| |||||||||||||||||||| ||||| ||| | ||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
43750680 |
cagcatgtgtccatgatctatagaataatgtgtagcaaattcattccatcccttgtgaatccaaatatcaccatcctttttagtcaaatgtacttcccat |
43750581 |
T |
|
| Q |
473 |
tctttgacatcgggagtcttgagaaacattggctttgataaatcaccgatatatttctcggtgaaagcatttggaattctctgcagt |
559 |
Q |
| |
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| |||| |||| |||||||||||||||||||| ||||| |||||||| ||||||||| |||||||||| ||||||| |||||||| |
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| T |
43750580 |
tttttgtcatctggagtcttgagaaacattgggtttgacaaatcaccactatatttcttagtgaaagcatctggaattttctgcagt |
43750494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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