View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14300_low_1 (Length: 1015)
Name: NF14300_low_1
Description: NF14300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14300_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 527; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 89 - 776
Target Start/End: Complemental strand, 11782787 - 11782098
Alignment:
| Q |
89 |
gacgggggaacttcccaagattgatgcaaatcttattggttggttctctaagaatgcattattggagtttcgggagagaatggaggggacatatctattg |
188 |
Q |
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| T |
11782787 |
gacgggggaacttcccaagagtgatgcaaatcttattggttggttctctaagaatgcattattagagtttcgggagagaatggaggggacatatctattg |
11782688 |
T |
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| Q |
189 |
tccgccattattagggatatgtttttgtgaggaagagaccaatgtaattgggtatttatattagtgatctcaaatctagaagacgtgattttaatatcaa |
288 |
Q |
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| T |
11782687 |
tccaccattattagggatatgtttttgtgaggaagagaccaatataattgggtatttatattagtgatctcaaatctggaagacgtgattttaatatcaa |
11782588 |
T |
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| Q |
289 |
attactcatattttaatctcataaaattgaatttgtaatttaatatcaagagaacaatctagatattattgactataaaaattacataattatattttta |
388 |
Q |
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| T |
11782587 |
attactcatattttaatctcataaaattgaatttataatttaatatcaagagaacaatctagatattattgactataaaaattacataattattttttta |
11782488 |
T |
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| Q |
389 |
acatcaaatttggatttccctttttaccctttctaggttagtcatgtcccaacctaagtctatccctttcatcaagtgatgtcatgttaattgtaaattg |
488 |
Q |
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| T |
11782487 |
acatcaaatttggatttccctttttaccctttttaggttagtcatgtcccaacctaagtctatccctttcatcaagtgatgtcatgttaattgtaaattg |
11782388 |
T |
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| Q |
489 |
taaaagagaaatgtgaannnnnnnnnnaatggcaattataagaaaggagnnnnnnnnncttttacaagaagtaccaaagtctc---cttcaaataaaaaa |
585 |
Q |
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| T |
11782387 |
taaaagagaaatgtgaattttttttttaatggcaattataagtaaggagaaaaaaaaa-aaatacaagcagtaccaaagtctccttcttcaaataaaaaa |
11782289 |
T |
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| Q |
586 |
gaagtactaaagcctatcttaaaacgaaattcctctcaccctnnnnnnngagccaaatcaaaactgcaccagaaaaccaaaagataatggtgaatgagat |
685 |
Q |
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| T |
11782288 |
gaagtactaaagcctatcttaaaacgaaattcctctcaccctaaaataagagccaaatcaaaactgcaccagaaaatcaaaagataatggtgaatgagat |
11782189 |
T |
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| Q |
686 |
gtacaatggatatgaaatattaatgtcataaagttcaacacttcaatttaaattttacagcgacgctccaaaatttaatcgatgattgcaa |
776 |
Q |
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| T |
11782188 |
gtacaatggatatgaaatattaatgtcataaagttcaacacttcaatttaaattgtacagtgacgctccaaaatttaatcgatgattgcaa |
11782098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 823 - 908
Target Start/End: Complemental strand, 11782057 - 11781972
Alignment:
| Q |
823 |
aagatcatgtttaaatacgtgtacatttaatgttatgaaattgaaagtgtcaaagctttgaaatttagttcataatcaacaaaggt |
908 |
Q |
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| T |
11782057 |
aagatcatgtttaaatacgtgtacatttaatgttatgaaattgaaagtgtcaaagctttgaaatttagttcataatcaacaaaggt |
11781972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 50
Target Start/End: Complemental strand, 11782850 - 11782811
Alignment:
| Q |
11 |
catcatcaacatggcatttgtgttgttagtggtggtggtg |
50 |
Q |
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| T |
11782850 |
catcatcaacatggcatttgtgttgttagtggtggtggtg |
11782811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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