View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14300_low_10 (Length: 565)
Name: NF14300_low_10
Description: NF14300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14300_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 439; Significance: 0; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 19 - 546
Target Start/End: Complemental strand, 5984873 - 5984355
Alignment:
| Q |
19 |
aagggaattccaagatcagcatcaaaattggcaagcacgtcatcaagaactccttcaccaaatagaaggaatccaaagaagcttgtcagtaagtacaccg |
118 |
Q |
| |
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||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5984873 |
aagggaattccaagatcagtatcaaaattggcaagaacatcatcaagaactccttcaccaaatagaaggaacccaaagaagcttgtcagtaagtacaccg |
5984774 |
T |
|
| Q |
119 |
aagagcatagagtaagggacgtacgcacaaccccgctcatccgtgaggaatcctccagttcattatctatgctatgaactgcaaataattaaagagcaca |
218 |
Q |
| |
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||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
5984773 |
aagagcatagagtaagggaagtacacacaaccccgctcatccgtgaggaatcctccagttcattatctatgctatgaactgcaaa----taaagagcaca |
5984678 |
T |
|
| Q |
219 |
caaatacaaccccatcaagcaaccaagcaaaaactacaaaatgtattattattattattcatcatgttgttaacatttctgactaatggtgtatgaccaa |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5984677 |
caaatacaaccccatcaagcaaccaagcaaaaactacaaaatg---tattattattattcatcatgttgttaacatttctgactaatggtgtatgaccaa |
5984581 |
T |
|
| Q |
319 |
aaattaaccaaaatattctggatttcaannnnnnnagttcatcgaaaattgactatggtttcttttcaaataagatggacatggaatgagactatgctta |
418 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5984580 |
aaattaaccaaaatattctggatttcaa--tttttagttcatcgaaaattgactatggtttcttttcaaataagatggacatggaatgagactatgctta |
5984483 |
T |
|
| Q |
419 |
tgtactaagtagtcaaaagaccttaaccttcttcatgcaaatacataaccaacttataattacacaggtctattatgagctttgtagcacctacacttct |
518 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5984482 |
tggactaagtagtcaaaagaccttaaccttcttcatgcaaatacataaccaacttataattacacaggtctattatgagctttgtagcacctacacttct |
5984383 |
T |
|
| Q |
519 |
aattgaaggagtttccggtgtccgatat |
546 |
Q |
| |
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||||||||||||| |||||||||||||| |
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| T |
5984382 |
aattgaaggagttgccggtgtccgatat |
5984355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 19 - 199
Target Start/End: Complemental strand, 5968864 - 5968684
Alignment:
| Q |
19 |
aagggaattccaagatcagcatcaaaattggcaagcacgtcatcaagaactccttcaccaaatagaaggaatccaaagaagcttgtcagtaagtacaccg |
118 |
Q |
| |
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||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5968864 |
aagggaattccaagatcagtatcaaaattggcaagaacatcatcaagaactccttcaccaaatagaaggaacccaaagaagcttgtcagtaagtacaccg |
5968765 |
T |
|
| Q |
119 |
aagagcatagagtaagggacgtacgcacaaccccgctcatccgtgaggaatcctccagttcattatctatgctatgaactg |
199 |
Q |
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||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
5968764 |
aagagcatagagtaagggaagtacgcacaaccccacgtatccgtgaggaatcctccagttcattctctatgctttgaactg |
5968684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 19 - 199
Target Start/End: Original strand, 8715283 - 8715463
Alignment:
| Q |
19 |
aagggaattccaagatcagcatcaaaattggcaagcacgtcatcaagaactccttcaccaaatagaaggaatccaaagaagcttgtcagtaagtacaccg |
118 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
8715283 |
aagggaattccaagatcagtatcaaaattggcaagaacatcatcaagaactccttcaccaaatagaaggaacccaaagaagcttgtcagtaagtacaccg |
8715382 |
T |
|
| Q |
119 |
aagagcatagagtaagggacgtacgcacaaccccgctcatccgtgaggaatcctccagttcattatctatgctatgaactg |
199 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
8715383 |
aagagcatagagtaagggatgtacgcacaaccccacgtatccgtgaggaatcctccagttcattctctatgctttgaactg |
8715463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 12 - 206
Target Start/End: Complemental strand, 5963738 - 5963544
Alignment:
| Q |
12 |
agaagcaaagggaattccaagatcagcatcaaaattggcaagcacgtcatcaagaactccttcaccaaatagaaggaatccaaagaagcttgtcagtaag |
111 |
Q |
| |
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|||| |||| |||||||||| ||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5963738 |
agaaccaaaaggaattccaaaatcagtatcaaaattggcaagcacatcatcaagagttccttcaccaaatagaaggaacccaaagaagcttgtcagtaca |
5963639 |
T |
|
| Q |
112 |
tacaccgaagagcatagagtaagggacgtacgcacaaccccgctcatccgtgaggaatcctccagttcattatctatgctatgaactgcaaataa |
206 |
Q |
| |
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|| || |||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
5963638 |
tatactgaagagcatagagtaagggaagtacgcacaaccccacgcatccgtgaggaatcctccagttcattatcaatgttatgaactgcaaataa |
5963544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 12 - 206
Target Start/End: Complemental strand, 5935341 - 5935147
Alignment:
| Q |
12 |
agaagcaaagggaattccaagatcagcatcaaaattggcaagcacgtcatcaagaactccttcaccaaatagaaggaatccaaagaagcttgtcagtaag |
111 |
Q |
| |
|
|||| |||| |||||||| |||| || ||||||||||||||| |||||| |||| | ||||||||||||||||| ||||||||||||||||||||| |
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| T |
5935341 |
agaaccaaaaggaattccgagattagtatcaaaattggcaagaacgtcaggaagagtatcgtcaccaaatagaaggaacccaaagaagcttgtcagtaag |
5935242 |
T |
|
| Q |
112 |
tacaccgaagagcatagagtaagggacgtacgcacaaccccgctcatccgtgaggaatcctccagttcattatctatgctatgaactgcaaataa |
206 |
Q |
| |
|
|| || |||||||||||||||||||| | ||||||||| || ||||| |||||| ||||||||||||||||||||| | |||||||||||||| |
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| T |
5935241 |
taaactgaagagcatagagtaagggaagcacgcacaacgccatgcatccatgaggagtcctccagttcattatctatgttgtgaactgcaaataa |
5935147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 380 - 490
Target Start/End: Complemental strand, 5968321 - 5968211
Alignment:
| Q |
380 |
cttttcaaataagatggacatggaatgagactatgcttatgtactaagtagtcaaaagaccttaaccttcttcatgcaaatacataaccaacttataatt |
479 |
Q |
| |
|
||||||| || || ||||||| ||||||| ||||||||| | |||||||||| |||||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
5968321 |
cttttcagattagttggacatagaatgaggtgatgcttatggaataagtagtcagaagaccttaatcttcttcatgcaaatccataaccaacttataatt |
5968222 |
T |
|
| Q |
480 |
acacaggtcta |
490 |
Q |
| |
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| ||| ||||| |
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| T |
5968221 |
atacaagtcta |
5968211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 373 - 466
Target Start/End: Complemental strand, 5963326 - 5963233
Alignment:
| Q |
373 |
atggtttcttttcaaataagatggacatggaatgagactatgcttatgtactaagtagtcaaaagaccttaaccttcttcatgcaaatacataa |
466 |
Q |
| |
|
||||||||||| ||||| || |||| ||||||||| ||| || || | |||||||||| ||||||| |||||||||||||||||| ||||| |
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| T |
5963326 |
atggtttctttgcaaattagttggaaatggaatgaagtgatggttttggaataagtagtcagaagacctcaaccttcttcatgcaaatccataa |
5963233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 499 - 543
Target Start/End: Original strand, 28503107 - 28503151
Alignment:
| Q |
499 |
tttgtagcacctacacttctaattgaaggagtttccggtgtccga |
543 |
Q |
| |
|
||||||||||| | ||||||||||||||| || |||||||||||| |
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|
| T |
28503107 |
tttgtagcaccaatacttctaattgaaggtgtgtccggtgtccga |
28503151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 499 - 543
Target Start/End: Original strand, 29815512 - 29815556
Alignment:
| Q |
499 |
tttgtagcacctacacttctaattgaaggagtttccggtgtccga |
543 |
Q |
| |
|
||||||||||| | ||||||||||||||| || |||||||||||| |
|
|
| T |
29815512 |
tttgtagcaccaatacttctaattgaaggtgtgtccggtgtccga |
29815556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 12 - 201
Target Start/End: Original strand, 5628142 - 5628331
Alignment:
| Q |
12 |
agaagcaaagggaattccaagatcagcatcaaaattggcaagcacgtcatcaagaactccttcaccaaatagaaggaatccaaagaagcttgtcagtaag |
111 |
Q |
| |
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|||| |||| |||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||| ||||| |||||||||||| ||| ||| |
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| T |
5628142 |
agaaccaaaaggaattccaagatcagcatcgaaattggcaagtacgtcatcaagagttccttcaccaaataggaggaacccaaagaagcttatcattaaa |
5628241 |
T |
|
| Q |
112 |
tacaccgaagagcatagagtaagggacgtacgcacaaccccgctcatccgtgaggaatcctccagttcattatctatgctatgaactgca |
201 |
Q |
| |
|
||||| || ||||||||| |||| ||||| ||||| || |||| ||||| ||||| ||||||||||||||||| ||||||||| |
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| T |
5628242 |
tacacggatgagcatagaccgagggctgtacgtacaacgccttgcatctgtgagttgtcctcgagttcattatctatgctgtgaactgca |
5628331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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