View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14300_low_11 (Length: 557)
Name: NF14300_low_11
Description: NF14300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14300_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 19 - 553
Target Start/End: Complemental strand, 12699468 - 12698936
Alignment:
| Q |
19 |
gttgctctgacaattatacctttatggtcggttcacacggctgatcaagatgatgctgagtccaggttcaatttggtgacaaggcaattttgcggtggca |
118 |
Q |
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| T |
12699468 |
gttgctctgacaattatacctttatggtcggttcacaccgctgatcaagatgatgctgactccaggttcaatttggtgacaaggcaattttgcggtggca |
12699369 |
T |
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| Q |
119 |
gccaccatggcgttgtcatgttaaatgaaatgttgacgcatctttctttgatcaactaaaagaacaagtatatgcacttgtatccgggacaaggaaggaa |
218 |
Q |
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| T |
12699368 |
gccaccatggcgttgtcgtgttaaatgaaatgttgacgcatctttctttgatcaactaaaagaacaagtatatgtacttgtatccgtgacgaggaaggaa |
12699269 |
T |
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| Q |
219 |
cttttgtgttggcaaaaactattcccatatctctgaaatgtcatgtacccatgggggaagcgttgacgttatattatgcaatgcaatggctgagcgacat |
318 |
Q |
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| T |
12699268 |
cttttgtgttggcaaaaactattcccatatctctgaaatgtcatgtacccatgggggaagcgttgacgttatattatgcaatgcaatggctgagcgacat |
12699169 |
T |
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| Q |
319 |
gtccttcaacaacgtggatttcacatccgattccaaagttactatagatgctttccatcaagctcaggttgatgttacgaagatagtcaaattagatccg |
418 |
Q |
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| T |
12699168 |
gtccttcaacaacgtggatttcacatctgattccaaagttactatagatgctttccatcagg--caggttgatgttacggagatagtcaaattagatccg |
12699071 |
T |
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| Q |
419 |
tgtgtcgacatttgttcacttcacaatttacaaactcgaagggcgagttctatagacgacaaacaaatgaggtagctcccattctggtagggttgccaca |
518 |
Q |
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| T |
12699070 |
tgtgtcgacatttgttcacttcacaatttacaaactccaagggcgagttctatagacgacaaacaaatgaggtagctcacattctggtagggttgccaca |
12698971 |
T |
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| Q |
519 |
tcattagctagttccactacttagtataatctacc |
553 |
Q |
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| T |
12698970 |
tcattagctagttccactacttattataatgtacc |
12698936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 269 - 496
Target Start/End: Complemental strand, 30449751 - 30449524
Alignment:
| Q |
269 |
atgggggaagcgttgacgttatattatgcaatgcaatggctgagcgacatgtccttcaacaacgtggatttcacatccgattccaaagttactatagatg |
368 |
Q |
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| T |
30449751 |
atgggggatgccttggtgttatactatgctttggaatgcctaagtgacatgtccttcgataatgtggacttcacatctaattccaaagttattatagatg |
30449652 |
T |
|
| Q |
369 |
ctttccatcaagctcaggttgatgttacgaaga-tagtcaaattagatccgtgtgtcgacatttgttcacttcacaatttacaaactcgaagggcgagtt |
467 |
Q |
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| T |
30449651 |
ctttcaatcaggaacgggttga-gttacggagactggtcacataatctctgtgtgtcgacgtttgtttacatcacacttcacaaactcgaaggttgagtt |
30449553 |
T |
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| Q |
468 |
ctatagacgacaaacaaatgaggtagctc |
496 |
Q |
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| T |
30449552 |
taatatgcaacaagcaaatgaggtagctc |
30449524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 508 - 541
Target Start/End: Original strand, 8274741 - 8274774
Alignment:
| Q |
508 |
gggttgccacatcattagctagttccactactta |
541 |
Q |
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| T |
8274741 |
gggttgccacattattagctagttccactactta |
8274774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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