View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14300_low_12 (Length: 545)
Name: NF14300_low_12
Description: NF14300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14300_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 515; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 1 - 527
Target Start/End: Original strand, 4412988 - 4413514
Alignment:
| Q |
1 |
aaaaatatcaatactatagtactatttatgtatatatcaatgtatgcgttgttccttttcaattttacgaaaagaaacaaaaccaatttatttcgtatca |
100 |
Q |
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| T |
4412988 |
aaaaatatcaatactatagtactatttatgtatatatcaatgtatgcgttgttccttttcaattttacgaaaagaaacaaaaccaatttatttcgtatca |
4413087 |
T |
|
| Q |
101 |
ggaaaatgaaatcacggaagatgggaaaaagacatcataatcttgtaattattttgctgagagtaacataaaaataaaggccaaatagttggtttgtttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
4413088 |
ggaaaatgaaatcacggaagatgggaaaaagacatcataatcttgtaattattttgctgagagtaacataaaaataaaggccaaatggttggtttgtttc |
4413187 |
T |
|
| Q |
201 |
tttgtgggtaaatggttaatggatcaaacaaagtactttgccctgtaatgagatgatcgtgatttacttttttaaactttattcctaatcaatattaatg |
300 |
Q |
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| T |
4413188 |
tttgtgggtaaatggttaatggatcaaacaaagtactttgccctgtaatgagatgatcgtgatttacttttttaaactttattcttaatcaatattaatg |
4413287 |
T |
|
| Q |
301 |
atgaaatgctcctttaaagaccaaaccttatattaaaagcattgttaattaagaaagtttctttatttgactagctaactaagtcttcaagattcttcat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4413288 |
atgaaatgctcctttaaagaccaaaccttatattaaaagcattgttaattaagaaagtttctttatttgactagctaactaagtcttcaagattcttcat |
4413387 |
T |
|
| Q |
401 |
ctgagttgatgaatgtgactaaatcacacattatcgagaaggtggtattggaagctgagaagaaatatattaatagaaaattatgattaaattagtaata |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4413388 |
ctgagttgatgaatgtgactaaatcacacattatcgagaaggtggtattggaagttgagaagaaatatattaatagaaaattatgattaaattagtaata |
4413487 |
T |
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| Q |
501 |
agatcaaagctttcaagggggaagggg |
527 |
Q |
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| T |
4413488 |
agatcaaagctttcaagggggaagggg |
4413514 |
T |
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