View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14300_low_18 (Length: 437)
Name: NF14300_low_18
Description: NF14300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14300_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 431
Target Start/End: Original strand, 134839 - 135271
Alignment:
| Q |
1 |
tgtgtatgaatgccagaagatgaaagagatcattgggaataattgcaatcctactgattgtgtacaacagaaagctaaaattaaattcccgaaattaatg |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
134839 |
tgtgtatgaatgccagaagatgaaggagatcattgggaataattgcaatcctactgattgtgtacaacagaaagctaaaattaaattcccgaaattaatg |
134938 |
T |
|
| Q |
101 |
attattgaactgcagaagcttcctagcctcaaatgtttcggtcaaagctctttcccttgctatattgagatgccacaatgttggcaaataaaaattgaag |
200 |
Q |
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| T |
134939 |
aagattgaactgcagaagcttcctagcctcaaatgtttcggtcaaagctctttcccttgctatattgagatgccacaatgtcggcgaataaaaattgaag |
135038 |
T |
|
| Q |
201 |
actgcccagagatgaagaccttttggttcgaaggaatcttatacaccccatatctttatgaaatttctttaaaaaataccaaatttgagaaatatgaagg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
135039 |
actgcccagagatgaagaccttttggttcgaaggaatcttatacaccccacgtctttatgaaatttctttaaaaaataccaaatttgacgaatacgaaga |
135138 |
T |
|
| Q |
301 |
ttttaatgacgtgatacaacgacacaataaatgatcgagtgttggtatgaggtattacaactttctccgcctctttctccttctgtcttactcttaacta |
400 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
135139 |
tgttaatgacgtgatacaacgacacaataaatgatcgagtgttggtatgaggtattacaactttctccgcctctttctccttctgtcttactcttaacta |
135238 |
T |
|
| Q |
401 |
tgtctctttc--ctcggtcgttctttcatctct |
431 |
Q |
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| T |
135239 |
tgtctctttcctctcggtcgttctttcatctct |
135271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 157357 - 157409
Alignment:
| Q |
1 |
tgtgtatgaatgccagaagatgaaagagatcattgggaataattgcaatccta |
53 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
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| T |
157357 |
tgtgtatgaatgccagaagatgaaggagatcattgggaataattacaatccta |
157409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 103; Significance: 4e-51; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 114 - 355
Target Start/End: Complemental strand, 34549933 - 34549691
Alignment:
| Q |
114 |
agaagcttcctagcctcaaatgtttcggtcaaagctctttcccttgctatattgagatgccacaatgttggcaaataaaaattgaagactgcccagagat |
213 |
Q |
| |
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|||||||||||||||||||||||||| || |||||| ||||||||||||| ||||||||||| ||||| | ||| |||| | |||||||||||||| |
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| T |
34549933 |
agaagcttcctagcctcaaatgtttcagtgaaagctatttcccttgctatgttgagatgccaaaatgtgagttgatagtaattaatgactgcccagagat |
34549834 |
T |
|
| Q |
214 |
gaagaccttttggttcgaaggaatcttatacaccccatatctttatgaaatttctttaaaaaataccaaatttgagaaatatgaaggttttaatgacgtg |
313 |
Q |
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|||||||||||||| |||||||||||||||||| ||| |||| | || |||| | || ||||||| |||||||| ||| |||||| | ||||||| ||| |
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| T |
34549833 |
gaagaccttttggtacgaaggaatcttatacactccaggtcttgaagagatttatgtagaaaatactaaatttgacaaagatgaagatgttaatgaagtg |
34549734 |
T |
|
| Q |
314 |
atacaacgacacaataaatgatcgagtg-ttggtatgaggtat |
355 |
Q |
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| T |
34549733 |
atacaacgacagaataaatgattgagtgtttggtgtgaggtat |
34549691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 57 - 355
Target Start/End: Original strand, 34377390 - 34377689
Alignment:
| Q |
57 |
attgtgtacaacagaaagctaaaattaaattcccgaaattaatgattattgaactgcagaagcttcctagcctcaaatgtttcggtcaaagctctttccc |
156 |
Q |
| |
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||||| |||||||||||||||| ||||||||||| || | |||| ||| |||| |||||||||||||||||||||||||| || |||||||||||| |
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| T |
34377390 |
attgtttacaacagaaagctaagattaaattcccaaagctgatgaaaattaaactaaagaagcttcctagcctcaaatgtttcagtgaaagctctttcca |
34377489 |
T |
|
| Q |
157 |
ttgctatattgagatgccacaatgttggcaaataaaaattgaagactgcccagagatgaagaccttttggttcgaaggaatcttatacaccccatatctt |
256 |
Q |
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|||||| ||||||||||| |||| | ||| |||| | ||||| |||||||||||||||||||||| | | |||||||| ||||| ||| | || |
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| T |
34377490 |
ttgctacgttgagatgccagcatgtgagtggatactaattaatgactgtccagagatgaagaccttttggtacaatggaatcttgtacactccaggtatt |
34377589 |
T |
|
| Q |
257 |
tatgaaatttctttaaaaaataccaaatttgagaaatatgaaggttttaatgacgtgatacaacgacacaataaatgatcgagtg-ttggtatgaggtat |
355 |
Q |
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||| ||||| | || || ||||||||||||| | | |||||| | ||||||| |||||||||||||| |||||||||| | ||| ||||| |||||||| |
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| T |
34377590 |
tatagaatttgtgtagaagataccaaatttgacatagatgaagatgttaatgaagtgatacaacgacagaataaatgattgtgtgtttggtgtgaggtat |
34377689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 34377349 - 34377393
Alignment:
| Q |
1 |
tgtgtatgaatgccagaagatgaaagagatcattgggaataattg |
45 |
Q |
| |
|
||||| ||||||| |||||||||| |||||||||||||||||||| |
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| T |
34377349 |
tgtgtctgaatgcgagaagatgaaggagatcattgggaataattg |
34377393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 257
Target Start/End: Complemental strand, 15890735 - 15890591
Alignment:
| Q |
113 |
cagaagcttcctagcctcaaatgtttcggtcaaagctctttcccttgctatattgagatgccacaatgttggcaaataaaaattgaagactgcccagaga |
212 |
Q |
| |
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||||||||||| | ||| ||||||||| ||| ||||||||||||| |||| |||| ||||| |||| ||| | |||||||||||||| |||| |
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| T |
15890735 |
cagaagcttcccaaccttaaatgtttctctcagagctctttcccttcctatgttgaactgccaagctgttatttaatcataattgaagactgccatgaga |
15890636 |
T |
|
| Q |
213 |
tgaagaccttttggttcgaaggaatcttatacaccccatatcttt |
257 |
Q |
| |
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||||||| ||||||||| | |||| ||| ||||| ||| |||||| |
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| T |
15890635 |
tgaagactttttggttcaatggaaccttgtacacaccaaatcttt |
15890591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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