View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14300_low_19 (Length: 433)

Name: NF14300_low_19
Description: NF14300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14300_low_19
NF14300_low_19
[»] chr3 (4 HSPs)
chr3 (7-416)||(52962655-52963064)
chr3 (16-212)||(49764130-49764325)
chr3 (16-134)||(31635799-31635917)
chr3 (16-212)||(48352615-48352809)
[»] chr5 (2 HSPs)
chr5 (26-310)||(42918387-42918672)
chr5 (16-125)||(6384681-6384790)
[»] chr6 (2 HSPs)
chr6 (16-212)||(7578681-7578877)
chr6 (19-152)||(23659806-23659939)
[»] chr4 (1 HSPs)
chr4 (26-204)||(13026321-13026499)
[»] chr1 (5 HSPs)
chr1 (26-181)||(47985731-47985886)
chr1 (50-122)||(45820199-45820271)
chr1 (54-204)||(15706045-15706195)
chr1 (26-76)||(50142853-50142903)
chr1 (91-148)||(34675043-34675100)
[»] chr8 (1 HSPs)
chr8 (91-155)||(18182105-18182169)


Alignment Details
Target: chr3 (Bit Score: 378; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 7 - 416
Target Start/End: Original strand, 52962655 - 52963064
Alignment:
Q  7 tcgaagaatatgtagtacaatttcaaccaccaaaacgattggagtttaaccttttctgtaagtgtctcaagtgggtccgacttgttgtggaaaatccttc 106  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  52962655 tcgaacaaaatgtagtacaatttcaaccaccaaaacgattggagtttaaccttttctggaagtgtctcaagtgggtccgatttgttgtggaaaatccttc 52962754  T
Q  107 tgttgcgatctttccagataacgaaaagaaccaaaattcaaataatggtgagcgcattcctagagtttttgaaaaaacctccaaaactacgaaactgaag 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  52962755 tgttgcgatctttccagataacgaaaagaaccaaaattcaaataatggtgagcgcattcctagagtttttgaaaaaacctccaagactacgaaactgaag 52962854  T
Q  207 agcatggttaagagcgttgccatgaggaactgaaacgaaccccaaccactttaaaaccaaatgccataaccgaccataaacgtcaccccgaaagaacaaa 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  52962855 agcatggttaagagcgttgccatgaggaactgaaacgaaccccaaccactttgaaaccaaatgccataaccgaccataaacgtcaccccgaaagaacaaa 52962954  T
Q  307 tgatataagctaaaatgaccctaaacatattatcgcagtaataccataatgtggtaattaatattgtaaaaaacatgcgtgcgaaacttaattgtacagc 406  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  52962955 tgatataagctaaaatgaccctaaacatattattgcagtaataccataatgtggtaattaatattgtaaaaaacatgcgtgcgaaacttaattgtacaac 52963054  T
Q  407 tagtgtataa 416  Q
    ||||||||||    
T  52963055 tagtgtataa 52963064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 16 - 212
Target Start/End: Original strand, 49764130 - 49764325
Alignment:
Q  16 atgtagtacaatttcaaccaccaaaacgattggagtttaaccttttctgtaagtgtctcaagtgggtccgacttgttgtggaaaatccttctgttgcgat 115  Q
    ||||||||| || ||||||||||| ||| ||||||||||||||||||   ||| ||||||| | | || ||||| ||||||||||| ||  |||||||||    
T  49764130 atgtagtacgatctcaaccaccaatacgtttggagtttaaccttttcaacaagagtctcaatttgatcagacttattgtggaaaattctgttgttgcgat 49764229  T
Q  116 ctttccagataacgaaaagaaccaaaattcaaataatggtgagcgcattcctagagtttttgaaaaaacctccaaaactacgaaactgaagagcatg 212  Q
    ||||||| ||||| ||||||||  || | |||||| |||| | |||| |||||||||||||| |||| ||||||| || |||||||||| |||||||    
T  49764230 ctttccaaataacaaaaagaactgaagtccaaatagtggt-aacgcaatcctagagtttttggaaaaccctccaagaccacgaaactgatgagcatg 49764325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 16 - 134
Target Start/End: Complemental strand, 31635917 - 31635799
Alignment:
Q  16 atgtagtacaatttcaaccaccaaaacgattggagtttaaccttttctgtaagtgtctcaagtgggtccgacttgttgtggaaaatccttctgttgcgat 115  Q
    ||||||||| |||||||||||||| ||| ||| ||||||| |||||| | ||| ||||||||  | || |||||||||||||||||||||||||||||||    
T  31635917 atgtagtacgatttcaaccaccaatacgtttgaagtttaatcttttcagcaagagtctcaagatgatcagacttgttgtggaaaatccttctgttgcgat 31635818  T
Q  116 ctttccagataacgaaaag 134  Q
    ||||||| ||||| |||||    
T  31635817 ctttccaaataacaaaaag 31635799  T

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Target: chr3; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 16 - 212
Target Start/End: Complemental strand, 48352809 - 48352615
Alignment:
Q  16 atgtagtacaatttcaaccaccaaaacgattggagtttaaccttttctgtaagtgtctcaagtgggtccgacttgttgtggaaaatccttctgttgcgat 115  Q
    ||||||||| || ||||||||||| ||| ||||||||||||||||||   ||| |||| || | | || ||||||||||||||||| ||  |||||||||    
T  48352809 atgtagtacgatctcaaccaccaatacgtttggagtttaaccttttcaacaagagtcttaatttgatcagacttgttgtggaaaattctgttgttgcgat 48352710  T
Q  116 ctttccagataacgaaaagaaccaaaattcaaataatggtgagcgcattcctagagtttttgaaaaaacctccaaaactacgaaactgaagagcatg 212  Q
    ||||||| ||||| ||||||||   | |  ||||| |||| |  ||| |||||||||||||| |||| ||||||| || |||||||||| |||||||    
T  48352709 ctttccaaataacaaaaagaac--tagtctaaatagtggtaaatgcaatcctagagtttttggaaaaccctccaagaccacgaaactgatgagcatg 48352615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 126; Significance: 8e-65; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 26 - 310
Target Start/End: Complemental strand, 42918672 - 42918387
Alignment:
Q  26 atttcaaccaccaaaacgattggagtttaaccttttctgtaagtgtctcaagtgggtccgacttgttgtggaaaatccttctgttgcgatctttccagat 125  Q
    ||||||||| |||||||| |||||||||||||||||||| ||| ||||||||  |||| ||||||||||||||||||||||||||||| |||||||| ||    
T  42918672 atttcaaccgccaaaacgcttggagtttaaccttttctgcaagagtctcaagctggtctgacttgttgtggaaaatccttctgttgcggtctttccaaat 42918573  T
Q  126 aacgaaaagaaccaaaattcaaataatggtgagcgcattcctaga-gtttttgaaaaaacctccaaaactacgaaactgaagagcatggttaagagcgtt 224  Q
    ||| |||||||||||||| ||||||||||| | ||||||||||||  |||||| ||||||||| || || |||||| |||  ||||||  || ||| |||    
T  42918572 aacaaaaagaaccaaaatccaaataatggtaaacgcattcctagatttttttggaaaaacctcaaagaccacgaaattgatcagcatgagtatgagtgtt 42918473  T
Q  225 gccatgaggaactgaaacgaaccccaaccactttaaaaccaaatgccataaccgaccataaacgtcaccccgaaagaacaaatgat 310  Q
     |||  | || ||||||||||||||||| ||||| |||||| | |||||||||||||||||| ||||| |  ||||||||||||||    
T  42918472 accacaaagagctgaaacgaaccccaactactttgaaaccagaggccataaccgaccataaaagtcacactaaaagaacaaatgat 42918387  T

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Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 16 - 125
Target Start/End: Complemental strand, 6384790 - 6384681
Alignment:
Q  16 atgtagtacaatttcaaccaccaaaacgattggagtttaaccttttctgtaagtgtctcaagtgggtccgacttgttgtggaaaatccttctgttgcgat 115  Q
    ||||||||| ||||||||||| |||| | || |||||||||||||| |  ||| |||||||  |||||||||||||||||||||||| || |||||||||    
T  6384790 atgtagtacgatttcaaccactaaaatgtttcgagtttaaccttttttacaagagtctcaaacgggtccgacttgttgtggaaaatcattatgttgcgat 6384691  T
Q  116 ctttccagat 125  Q
    ||||||||||    
T  6384690 ctttccagat 6384681  T

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Target: chr6 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 16 - 212
Target Start/End: Original strand, 7578681 - 7578877
Alignment:
Q  16 atgtagtacaatttcaaccaccaaaacgattggagtttaaccttttctgtaagtgtctcaagtgggtccgacttgttgtggaaaatccttctgttgcgat 115  Q
    ||||||||| || ||||||||||| ||| ||||||||||||||||||   ||| || |||| | | || |||||||||||||||||| |  |||||||||    
T  7578681 atgtagtacgatctcaaccaccaatacgtttggagtttaaccttttcaacaagagtgtcaatttgatcagacttgttgtggaaaatcatgttgttgcgat 7578780  T
Q  116 ctttccagataacgaaaagaaccaaaattcaaataatggtgagcgcattcctagagtttttgaaaaaacctccaaaactacgaaactgaagagcatg 212  Q
    ||||||| ||||| ||||||||  || | |||||| |||| | |||| |||||||||||||| |||| ||||||| || |||||||||| |||||||    
T  7578781 ctttccaaataacaaaaagaactgaagtccaaatagtggtaaacgcaatcctagagtttttggaaaaccctccaagaccacgaaactgatgagcatg 7578877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 152
Target Start/End: Original strand, 23659806 - 23659939
Alignment:
Q  19 tagtacaatttcaaccaccaaaacgattggagtttaaccttttctgtaagtgtctcaagtgggtccgacttgttgtggaaaatccttctgttgcgatctt 118  Q
    |||||| ||||||||||| || ||| |||||||||||||||||||  ||| ||||||||  | ||  ||||||| ||||||||| |  | || |||||||    
T  23659806 tagtacgatttcaaccactaatacgtttggagtttaaccttttctccaagagtctcaagctgatctaacttgttttggaaaatcgtgttattacgatctt 23659905  T
Q  119 tccagataacgaaaagaaccaaaattcaaataat 152  Q
    |||| | ||| ||||| ||| |||| || |||||    
T  23659906 tccaaacaacaaaaagcaccgaaatccagataat 23659939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 26 - 204
Target Start/End: Original strand, 13026321 - 13026499
Alignment:
Q  26 atttcaaccaccaaaacgattggagtttaaccttttctgtaagtgtctcaagtgggtccgacttgttgtggaaaatccttctgttgcgatctttccagat 125  Q
    |||||| ||||||| ||| |||||||||||||||||||| ||| ||||||||  |||||||||||||||||||||||||  | || ||||||||||| ||    
T  13026321 atttcagccaccaatacgtttggagtttaaccttttctgcaagagtctcaagctggtccgacttgttgtggaaaatcctattattacgatctttccatat 13026420  T
Q  126 aacgaaaagaaccaaaattcaaataatggtgagcgcattcctagagtttttgaaaaaacctccaaaactacgaaactga 204  Q
    ||| ||||  ||| |||| || |||||||| | ||||||||| ||||||||| |||| | ||||  || ||||||||||    
T  13026421 aacaaaaatcaccgaaatccagataatggtaaacgcattccttgagtttttggaaaagcatccatgaccacgaaactga 13026499  T

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Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 26 - 181
Target Start/End: Original strand, 47985731 - 47985886
Alignment:
Q  26 atttcaaccaccaaaacgattggagtttaaccttttctgtaagtgtctcaagtgggtccgacttgttgtggaaaatccttctgttgcgatctttccagat 125  Q
    |||||| ||||||| ||| |||||||||||| ||||||| ||| ||||| ||  |||||||||||||||||||||||||  | || |||| |||||| ||    
T  47985731 atttcagccaccaagacgtttggagtttaacattttctgcaagagtctccagctggtccgacttgttgtggaaaatcctattattacgatatttccatat 47985830  T
Q  126 aacgaaaagaaccaaaattcaaataatggtgagcgcattcctagagtttttgaaaa 181  Q
    ||| ||||  | | |||| || |||||||  | ||||||||| |||||||||||||    
T  47985831 aacaaaaatcatcgaaatccagataatggcaaacgcattccttgagtttttgaaaa 47985886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 50 - 122
Target Start/End: Complemental strand, 45820271 - 45820199
Alignment:
Q  50 gtttaaccttttctgtaagtgtctcaagtgggtccgacttgttgtggaaaatccttctgttgcgatctttcca 122  Q
    |||||||||||||  |||| ||||||||    || ||||||||||||||||| ||||||||||||||||||||    
T  45820271 gtttaaccttttccttaagagtctcaagattatcagacttgttgtggaaaattcttctgttgcgatctttcca 45820199  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 204
Target Start/End: Complemental strand, 15706195 - 15706045
Alignment:
Q  54 aaccttttctgtaagtgtctcaagtgggtccgacttgttgtggaaaatccttctgttgcgatctttccagataacgaaaagaaccaaaattcaaataatg 153  Q
    ||||||||||| ||||||||| ||  | || |||||||| |||||||||||  | || ||||||||||| | ||| ||||  ||| |||| || ||| |     
T  15706195 aaccttttctgcaagtgtctcgagctgatctgacttgttttggaaaatcctattattacgatctttccaaacaacaaaaatcaccgaaatccagatagta 15706096  T
Q  154 gtgagcgcattcctagagtttttgaaaaaacctccaaaactacgaaactga 204  Q
    || | |||| |||| || |||||| |||||||||||| ||  |||||||||    
T  15706095 gtaaacgcaatccttgaatttttggaaaaacctccaagaccgcgaaactga 15706045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 50142853 - 50142903
Alignment:
Q  26 atttcaaccaccaaaacgattggagtttaaccttttctgtaagtgtctcaa 76  Q
    ||||||||||||| |||| ||||||||| |||||||||| ||| |||||||    
T  50142853 atttcaaccaccagaacgtttggagtttcaccttttctgcaagagtctcaa 50142903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 148
Target Start/End: Original strand, 34675043 - 34675100
Alignment:
Q  91 ttgtggaaaatccttctgttgcgatctttccagataacgaaaagaaccaaaattcaaa 148  Q
    |||||||||||| ||||||| ||||||||||| ||||| || |||| | |||||||||    
T  34675043 ttgtggaaaatctttctgttacgatctttccatataaccaagagaatcgaaattcaaa 34675100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 155
Target Start/End: Original strand, 18182105 - 18182169
Alignment:
Q  91 ttgtggaaaatccttctgttgcgatctttccagataacgaaaagaaccaaaattcaaataatggt 155  Q
    ||||||||||||||  |||| ||||||||||| ||||| || | |||| ||||||||||||||||    
T  18182105 ttgtggaaaatcctcttgttacgatctttccaaataacaaataaaaccgaaattcaaataatggt 18182169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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