View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14300_low_2 (Length: 798)

Name: NF14300_low_2
Description: NF14300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14300_low_2
NF14300_low_2
[»] chr2 (8 HSPs)
chr2 (18-237)||(37134946-37135165)
chr2 (568-786)||(37134373-37134591)
chr2 (367-471)||(37134712-37134816)
chr2 (743-786)||(22570937-22570980)
chr2 (736-782)||(43214565-43214611)
chr2 (743-786)||(21104482-21104525)
chr2 (740-782)||(25933562-25933604)
chr2 (743-788)||(18300972-18301017)
[»] chr4 (2 HSPs)
chr4 (737-782)||(52721259-52721303)
chr4 (743-788)||(3403648-3403693)
[»] chr5 (3 HSPs)
chr5 (743-789)||(5612514-5612560)
chr5 (753-782)||(26691626-26691655)
chr5 (753-782)||(26961358-26961387)
[»] chr3 (7 HSPs)
chr3 (743-789)||(21157801-21157847)
chr3 (743-786)||(30226420-30226463)
chr3 (740-782)||(6134461-6134503)
chr3 (743-785)||(38889155-38889197)
chr3 (753-782)||(29915871-29915900)
chr3 (753-782)||(29965024-29965053)
chr3 (749-782)||(49419241-49419274)
[»] chr7 (1 HSPs)
chr7 (740-782)||(1043150-1043192)
[»] chr1 (3 HSPs)
chr1 (738-788)||(13013065-13013115)
chr1 (753-782)||(2472933-2472962)
chr1 (753-786)||(3708354-3708387)
[»] chr6 (2 HSPs)
chr6 (736-781)||(234299-234344)
chr6 (753-786)||(13607860-13607893)


Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-108; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-108
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 37135165 - 37134946
Alignment:
Q  18 gttttcgccataattaatttaccacctttgcgccgataataaatgattagataaataaatagattctcaaaataaaagattcaacttggatccttttcgg 117  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37135165 gttttcgccataattaatttaccacctttgcgctgataataaatgattagataaataaatagattctcaaaataaaagattcaacttggatccttttcgg 37135066  T
Q  118 cctttgttcaggcgatccagtcaaatcttgatcgccgtgaaatgaagcggggtttatgagaatgaatgttgttgaaaatgggtaagacgctattattatc 217  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  37135065 cctttgttcaggcgatccagttaaatctcgatcgccgtgaaatgaagcggggtttatgagaatgaatgttgttgaaaatgggtaagactctatttttatc 37134966  T
Q  218 aaaagtttttcacttctctc 237  Q
    ||||||||||||||||||||    
T  37134965 aaaagtttttcacttctctc 37134946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 568 - 786
Target Start/End: Complemental strand, 37134591 - 37134373
Alignment:
Q  568 tgatttgtgcaattaaaggtgtagcaatcatttcgctccgcgttgcatgctttgtgttgcatctttagacgcgtttatcatcttctttcttcactaaatg 667  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37134591 tgatttgtgcaattaaaggtgtagcaatcatttcgctccgcgttacatgctttgtgttgcatctttagacgcgtttatcatcttctttcttcactaaatg 37134492  T
Q  668 taaataaaatactctcaacgtatatttaattatatttatgatatagtaatgttaaggcacatatgatgtaagctctgaagcccaaatacttcaaaataga 767  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  37134491 taaataaaatactctcaacgtatatttagttatatttatgatatagtaatgttaaggcacatatgatgtaagctctaaagcccagatacttcaaaataga 37134392  T
Q  768 tgacgtatcgtatcctctg 786  Q
    ||||||| |||||||||||    
T  37134391 tgacgtaccgtatcctctg 37134373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 367 - 471
Target Start/End: Complemental strand, 37134816 - 37134712
Alignment:
Q  367 tatatgtaaaagggaacaaggttgtattctccttttatttttgttgagagaaagacagtgaattttaaggggaagaaagaaaaagaattaaagaagtgta 466  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37134816 tatatgtaaaagggaacaaggttgtattctccttttatttttgttgagagaaagacagtgaattttaaggggaagaaagaaaaagaattaaagaagtgta 37134717  T
Q  467 aaatg 471  Q
    |||||    
T  37134716 aaatg 37134712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 743 - 786
Target Start/End: Original strand, 22570937 - 22570980
Alignment:
Q  743 tgaagcccaaatacttcaaaatagatgacgtatcgtatcctctg 786  Q
    ||||||||| |||||||||||||||||||||| |||||||||||    
T  22570937 tgaagcccagatacttcaaaatagatgacgtaccgtatcctctg 22570980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 736 - 782
Target Start/End: Original strand, 43214565 - 43214611
Alignment:
Q  736 taagctctgaagcccaaatacttcaaaatagatgacgtatcgtatcc 782  Q
    |||||||||||| ||| |||||||||||| |||||||||||||||||    
T  43214565 taagctctgaagtccagatacttcaaaatggatgacgtatcgtatcc 43214611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 743 - 786
Target Start/End: Original strand, 21104482 - 21104525
Alignment:
Q  743 tgaagcccaaatacttcaaaatagatgacgtatcgtatcctctg 786  Q
    |||||||| ||||||| ||||| |||||||||||||||||||||    
T  21104482 tgaagccccaatactttaaaatggatgacgtatcgtatcctctg 21104525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 740 - 782
Target Start/End: Original strand, 25933562 - 25933604
Alignment:
Q  740 ctctgaagcccaaatacttcaaaatagatgacgtatcgtatcc 782  Q
    |||||||||||| |||||||||||| ||||| |||||||||||    
T  25933562 ctctgaagcccatatacttcaaaatggatgatgtatcgtatcc 25933604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 743 - 788
Target Start/End: Original strand, 18300972 - 18301017
Alignment:
Q  743 tgaagcccaaatacttcaaaatagatgacgtatcgtatcctctgtg 788  Q
    ||||||||  |||||||||||| ||||||||||||||||| |||||    
T  18300972 tgaagccctgatacttcaaaatggatgacgtatcgtatcccctgtg 18301017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 737 - 782
Target Start/End: Original strand, 52721259 - 52721303
Alignment:
Q  737 aagctctgaagcccaaatacttcaaaatagatgacgtatcgtatcc 782  Q
    |||||||||||||||| |||||||||||||||||||||||||||||    
T  52721259 aagctctgaagcccaa-tacttcaaaatagatgacgtatcgtatcc 52721303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 743 - 788
Target Start/End: Complemental strand, 3403693 - 3403648
Alignment:
Q  743 tgaagcccaaatacttcaaaatagatgacgtatcgtatcctctgtg 788  Q
    |||||||| ||||||||||||| ||||||||| ||||||| |||||    
T  3403693 tgaagccccaatacttcaaaatggatgacgtaccgtatcccctgtg 3403648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 743 - 789
Target Start/End: Complemental strand, 5612560 - 5612514
Alignment:
Q  743 tgaagcccaaatacttcaaaatagatgacgtatcgtatcctctgtgc 789  Q
    ||||||||| |||||||||||| ||||||||||||||| ||||||||    
T  5612560 tgaagcccagatacttcaaaatggatgacgtatcgtattctctgtgc 5612514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 753 - 782
Target Start/End: Original strand, 26691626 - 26691655
Alignment:
Q  753 atacttcaaaatagatgacgtatcgtatcc 782  Q
    ||||||||||||||||||||||||||||||    
T  26691626 atacttcaaaatagatgacgtatcgtatcc 26691655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 753 - 782
Target Start/End: Original strand, 26961358 - 26961387
Alignment:
Q  753 atacttcaaaatagatgacgtatcgtatcc 782  Q
    ||||||||||||||||||||||||||||||    
T  26961358 atacttcaaaatagatgacgtatcgtatcc 26961387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 743 - 789
Target Start/End: Complemental strand, 21157847 - 21157801
Alignment:
Q  743 tgaagcccaaatacttcaaaatagatgacgtatcgtatcctctgtgc 789  Q
    ||||||||| |||||||||||| ||||||||||||||| ||||||||    
T  21157847 tgaagcccagatacttcaaaatggatgacgtatcgtattctctgtgc 21157801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 743 - 786
Target Start/End: Original strand, 30226420 - 30226463
Alignment:
Q  743 tgaagcccaaatacttcaaaatagatgacgtatcgtatcctctg 786  Q
    ||||||||| |||||||||||| |||||| ||||||||||||||    
T  30226420 tgaagcccatatacttcaaaatggatgacttatcgtatcctctg 30226463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 740 - 782
Target Start/End: Complemental strand, 6134503 - 6134461
Alignment:
Q  740 ctctgaagcccaaatacttcaaaatagatgacgtatcgtatcc 782  Q
    |||||||||||  |||||||||||| |||||||||||||||||    
T  6134503 ctctgaagccctgatacttcaaaatggatgacgtatcgtatcc 6134461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 743 - 785
Target Start/End: Complemental strand, 38889197 - 38889155
Alignment:
Q  743 tgaagcccaaatacttcaaaatagatgacgtatcgtatcctct 785  Q
    ||||||||  |||||||||||| ||||||||||||||||||||    
T  38889197 tgaagccctgatacttcaaaatggatgacgtatcgtatcctct 38889155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 753 - 782
Target Start/End: Original strand, 29915871 - 29915900
Alignment:
Q  753 atacttcaaaatagatgacgtatcgtatcc 782  Q
    ||||||||||||||||||||||||||||||    
T  29915871 atacttcaaaatagatgacgtatcgtatcc 29915900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 753 - 782
Target Start/End: Original strand, 29965024 - 29965053
Alignment:
Q  753 atacttcaaaatagatgacgtatcgtatcc 782  Q
    ||||||||||||||||||||||||||||||    
T  29965024 atacttcaaaatagatgacgtatcgtatcc 29965053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 749 - 782
Target Start/End: Original strand, 49419241 - 49419274
Alignment:
Q  749 ccaaatacttcaaaatagatgacgtatcgtatcc 782  Q
    |||||||||||||||| |||||||||||||||||    
T  49419241 ccaaatacttcaaaatggatgacgtatcgtatcc 49419274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 740 - 782
Target Start/End: Complemental strand, 1043192 - 1043150
Alignment:
Q  740 ctctgaagcccaaatacttcaaaatagatgacgtatcgtatcc 782  Q
    |||||||||||  |||||||||||| |||||||||||||||||    
T  1043192 ctctgaagccccgatacttcaaaatggatgacgtatcgtatcc 1043150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 738 - 788
Target Start/End: Complemental strand, 13013115 - 13013065
Alignment:
Q  738 agctctgaagcccaaatacttcaaaatagatgacgtatcgtatcctctgtg 788  Q
    |||| |||||||| ||||||||||||| |||||| |||||||||| |||||    
T  13013115 agctgtgaagccccaatacttcaaaatggatgacatatcgtatcccctgtg 13013065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 753 - 782
Target Start/End: Complemental strand, 2472962 - 2472933
Alignment:
Q  753 atacttcaaaatagatgacgtatcgtatcc 782  Q
    ||||||||||||||||||||||||||||||    
T  2472962 atacttcaaaatagatgacgtatcgtatcc 2472933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 753 - 786
Target Start/End: Complemental strand, 3708387 - 3708354
Alignment:
Q  753 atacttcaaaatagatgacgtatcgtatcctctg 786  Q
    |||||||||||| |||||||||||||||||||||    
T  3708387 atacttcaaaatggatgacgtatcgtatcctctg 3708354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 736 - 781
Target Start/End: Original strand, 234299 - 234344
Alignment:
Q  736 taagctctgaagcccaaatacttcaaaatagatgacgtatcgtatc 781  Q
    |||||||||||||||  |||||||||||| | ||||||||||||||    
T  234299 taagctctgaagccccgatacttcaaaatggttgacgtatcgtatc 234344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 753 - 786
Target Start/End: Complemental strand, 13607893 - 13607860
Alignment:
Q  753 atacttcaaaatagatgacgtatcgtatcctctg 786  Q
    |||||||||||| |||||||||||||||||||||    
T  13607893 atacttcaaaatggatgacgtatcgtatcctctg 13607860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University