View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14300_low_20 (Length: 431)
Name: NF14300_low_20
Description: NF14300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14300_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 30 - 426
Target Start/End: Complemental strand, 33707370 - 33706974
Alignment:
| Q |
30 |
agcaaaggcactgaaactgatgaacataactctagtatgacagcaaatgtacatgtaatccgttgagttatctaaattgtccaaaaccgaggaagattaa |
129 |
Q |
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| T |
33707370 |
agcaaaggcactgaaactgatgaacataactctagtacgacagcaaatgtacatgtaatccgttgagttatctaaattgtccaaaatcgaggaagattaa |
33707271 |
T |
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| Q |
130 |
gtgtatcacaatgatagatctattcatgtcttttagctcatgaatttacctatggttccataaaatatcatttatctccttttcatatgggttcacattg |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33707270 |
gtgtatcacaatgatagatctattcatgtcttttagctcatgaatttatctatggttccataaaatatcatttatctccttttcatatgggttcacattg |
33707171 |
T |
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| Q |
230 |
ggatgagagatgcatcaacggatcccagttctgccacggttgaggttagttatttctttgtgcagtatgaagccttacaaaatcacaatcattttatgca |
329 |
Q |
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||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33707170 |
ggatgagagatgcataaacggaacccagttctgccaaggttgaggttagttatttctttgtgcagtatgaagccttacaaaatcacaatcattttatgca |
33707071 |
T |
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| Q |
330 |
tttatagggaaaattaaccatgatgttgtagacccactcaattttgtaagcaagttaactcaaatttgattcctgagtcctaattccatatgattct |
426 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33707070 |
tttataaggaaaattaaccatgatgttgtagacccactcaattttgtaagcaagttaactcaaatttgattcctgagtcctaattccatatgattct |
33706974 |
T |
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