View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14300_low_21 (Length: 427)

Name: NF14300_low_21
Description: NF14300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14300_low_21
NF14300_low_21
[»] chr3 (3 HSPs)
chr3 (18-419)||(52341130-52341531)
chr3 (132-213)||(37065965-37066048)
chr3 (162-215)||(33639651-33639706)
[»] chr2 (1 HSPs)
chr2 (159-213)||(34238815-34238871)
[»] chr1 (1 HSPs)
chr1 (164-211)||(19990276-19990325)
[»] chr7 (4 HSPs)
chr7 (180-213)||(19156221-19156254)
chr7 (180-213)||(20008238-20008271)
chr7 (180-213)||(20755620-20755653)
chr7 (180-212)||(20009105-20009137)
[»] chr5 (4 HSPs)
chr5 (180-213)||(23237039-23237072)
chr5 (180-213)||(33766483-33766516)
chr5 (180-213)||(42994475-42994508)
chr5 (180-212)||(10555378-10555410)
[»] chr6 (2 HSPs)
chr6 (158-211)||(2480002-2480057)
chr6 (180-212)||(25344845-25344877)
[»] chr4 (1 HSPs)
chr4 (158-211)||(27109766-27109821)


Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 18 - 419
Target Start/End: Complemental strand, 52341531 - 52341130
Alignment:
Q  18 aagtagattttgtcattgaagtcttctgggaattaaagagtggcaattaaagagggatatttgagaatatgttggggaaggaaatccaaaagcggatcat 117  Q
    |||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52341531 aagtagattttgtcattgaagctttctgggaattaaagagtggcaactaaagagggatatttgagaatatgttggggaaggaaatccaaaagcggatcat 52341432  T
Q  118 atgagtctcaattaaaaaccgttagatttaaaagattggggggctaagatttggagtaa--gtgtagacttacttttggagtcaatatatccctcctcgt 215  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  || |||||||||| |||||||||||||||| ||||||||    
T  52341431 atgagtctcaattaaaaaccgttcgatttaaaagattggggggctaagatttggagtaattgtatagacttactcttggagtcaatatatctctcctcgt 52341332  T
Q  216 agggtgatagataatgctttataaagnnnnnnnnnnntcaaaagaaattatcacttcttcaccttccttttgcattctctcctttattcaccaggatcat 315  Q
    | |||    |||||||||||||||||           |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  52341331 atggt----gataatgctttataaag-aaaaaaaaaatcaaaagaaattatcacttcttcaccttccttttgcattctctcctttattcactaggatcat 52341237  T
Q  316 caaaacaacgattgacccataaattttccgcact---ggccacttataatatttttgtttttaaagcataaatgtaaacctatattttggaggaacgtac 412  Q
    |||||||||||| ||||||||||||||||||| |   ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  52341236 caaaacaacgatggacccataaattttccgcagtgtaggccacttataatatttttgtttttaaagcataaatgtaaacctatattttagaggaacgtac 52341137  T
Q  413 atcataa 419  Q
    |||||||    
T  52341136 atcataa 52341130  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 132 - 213
Target Start/End: Complemental strand, 37066048 - 37065965
Alignment:
Q  132 aaaaccgttagatttaaaagattggggggctaagatttggagtaagtgtaga--cttacttttggagtcaatatatccctcctc 213  Q
    |||||||||||||| |||||| |   |||| |||||||||||||||| ||||  |||||| |||||||||| ||||||||||||    
T  37066048 aaaaccgttagattaaaaagaattaagggcaaagatttggagtaagtttagagacttactcttggagtcaaaatatccctcctc 37065965  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 215
Target Start/End: Original strand, 33639651 - 33639706
Alignment:
Q  162 taagatttggagtaagtgt--agacttacttttggagtcaatatatccctcctcgt 215  Q
    |||||| |||||||||| |  ||||||||| |||||||||||||||||||||||||    
T  33639651 taagatctggagtaagtctttagacttactcttggagtcaatatatccctcctcgt 33639706  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 159 - 213
Target Start/End: Complemental strand, 34238871 - 34238815
Alignment:
Q  159 ggctaagatttggagtaagtgta--gacttacttttggagtcaatatatccctcctc 213  Q
    |||||||||||||||||||| ||  ||||||||||||||||||| ||||| ||||||    
T  34238871 ggctaagatttggagtaagtctatagacttacttttggagtcaaaatatctctcctc 34238815  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 211
Target Start/End: Complemental strand, 19990325 - 19990276
Alignment:
Q  164 agatttggagtaagtgt--agacttacttttggagtcaatatatccctcc 211  Q
    ||||||||||||||| |  ||||||||| |||||||||||||||||||||    
T  19990325 agatttggagtaagtctttagacttactcttggagtcaatatatccctcc 19990276  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 213
Target Start/End: Complemental strand, 19156254 - 19156221
Alignment:
Q  180 tagacttacttttggagtcaatatatccctcctc 213  Q
    |||||||||| |||||||||||||||||||||||    
T  19156254 tagacttactcttggagtcaatatatccctcctc 19156221  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 213
Target Start/End: Complemental strand, 20008271 - 20008238
Alignment:
Q  180 tagacttacttttggagtcaatatatccctcctc 213  Q
    |||||||||| |||||||||||||||||||||||    
T  20008271 tagacttactcttggagtcaatatatccctcctc 20008238  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 213
Target Start/End: Complemental strand, 20755653 - 20755620
Alignment:
Q  180 tagacttacttttggagtcaatatatccctcctc 213  Q
    |||||||||| |||||||||||||||||||||||    
T  20755653 tagacttactcttggagtcaatatatccctcctc 20755620  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 20009105 - 20009137
Alignment:
Q  180 tagacttacttttggagtcaatatatccctcct 212  Q
    |||||||||| ||||||||||||||||||||||    
T  20009105 tagacttactcttggagtcaatatatccctcct 20009137  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 213
Target Start/End: Complemental strand, 23237072 - 23237039
Alignment:
Q  180 tagacttacttttggagtcaatatatccctcctc 213  Q
    |||||||||| |||||||||||||||||||||||    
T  23237072 tagacttactcttggagtcaatatatccctcctc 23237039  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 213
Target Start/End: Complemental strand, 33766516 - 33766483
Alignment:
Q  180 tagacttacttttggagtcaatatatccctcctc 213  Q
    |||||||||| |||||||||||||||||||||||    
T  33766516 tagacttactcttggagtcaatatatccctcctc 33766483  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 213
Target Start/End: Complemental strand, 42994508 - 42994475
Alignment:
Q  180 tagacttacttttggagtcaatatatccctcctc 213  Q
    |||||||||| |||||||||||||||||||||||    
T  42994508 tagacttactcttggagtcaatatatccctcctc 42994475  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 10555410 - 10555378
Alignment:
Q  180 tagacttacttttggagtcaatatatccctcct 212  Q
    |||||||||| ||||||||||||||||||||||    
T  10555410 tagacttactcttggagtcaatatatccctcct 10555378  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 158 - 211
Target Start/End: Original strand, 2480002 - 2480057
Alignment:
Q  158 gggctaagatttggagtaagtgtag--acttacttttggagtcaatatatccctcc 211  Q
    ||||||||||||||||||| | ||   ||||||| |||||||||||||||||||||    
T  2480002 gggctaagatttggagtaactttaagcacttactcttggagtcaatatatccctcc 2480057  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 25344877 - 25344845
Alignment:
Q  180 tagacttacttttggagtcaatatatccctcct 212  Q
    |||||||||| ||||||||||||||||||||||    
T  25344877 tagacttactcttggagtcaatatatccctcct 25344845  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 27109821 - 27109766
Alignment:
Q  158 gggctaagatttggagtaagtgtag--acttacttttggagtcaatatatccctcc 211  Q
    ||||||||||||||||||| | ||   ||||||| |||||||||||||||||||||    
T  27109821 gggctaagatttggagtaactttaagcacttactcttggagtcaatatatccctcc 27109766  T

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