View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14300_low_22 (Length: 417)
Name: NF14300_low_22
Description: NF14300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14300_low_22 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 20 - 368
Target Start/End: Complemental strand, 20427387 - 20427047
Alignment:
| Q |
20 |
gggtttacttgaaacttcaaccttacagattgaagtctcttgcaaagaaaagaaatgagaaactgaatccccgtttctatggtccttatcagattatcaa |
119 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
20427387 |
gggtttacttgaaactacaaccttacagattgaagtctcttgcaaagaaaagaaatgagaaactgaatcaccgtttctatggtccttatcagattatcaa |
20427288 |
T |
|
| Q |
120 |
gcaaataggtcaagttgcttttgaattcgctctacctccagaaagcaaaatacacccagttttccatgcatctttactgaagaaagctatttctccctca |
219 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20427287 |
gcaaataggttaagttgcttttgaattcgctgtacctccagaaagcaaaatacacccagttttccatgcatctttactgaagaaagctatttctccctca |
20427188 |
T |
|
| Q |
220 |
acaaatccacaaccacttccgccaatgctctctgaagacatggaattacaagttgtccctgctgatgtcaaagctgtacgcaacactact----gatggt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
20427187 |
acaaatccacaaccacttccgccaatgctctctgaagacatggaattacaagttgtccct------------gctgtacgcaacactactgatggatggt |
20427100 |
T |
|
| Q |
316 |
gttgctgaggtcctcattcaatggaaagaccttcccgaatttgaagctacttg |
368 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20427099 |
gttgctgaggtcctcattcaatggaaagaccttcccgaatttgaagctacttg |
20427047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University