View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14300_low_23 (Length: 408)
Name: NF14300_low_23
Description: NF14300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14300_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 17 - 397
Target Start/End: Original strand, 43921146 - 43921526
Alignment:
| Q |
17 |
aaaaagttggctgcaatttacactttaaaaagccataatgataataaagaacgacaagataatgctactttaaacaggtnnnnnnnntctaggtcatgtt |
116 |
Q |
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| T |
43921146 |
aaaaagttggctgcaatttacactttaaaaagccataatgataataaagaacgacaagataatgctactttaaacaggtaaaaaaaatctaggtcatgtt |
43921245 |
T |
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| Q |
117 |
tgctaatgaatattctcattcctgactccatcatgatatgtgcaatgcaaatgtgtgttgcaatctctactctctaactacagacaaaaaatgaaggaat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43921246 |
tgctaatgaatattctcattcctgactccatcatgatatgtgcaatgcaaatgtgtgttgcaatctctactctctaactacagacaaaaaatgaaggaat |
43921345 |
T |
|
| Q |
217 |
tattccatcaatagaaatatacagaaaacattttctaggctagcctattttccaaacaacagtctccaactaaacatgatgtattattcaaaaagcaagc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43921346 |
tattccatcaatagaaatatacagaaaacattttctaggctagcctattttccaaacaacagtctccaactaaacatgatgtattattcaaaaagcaagc |
43921445 |
T |
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| Q |
317 |
tttttccaataagttgtgtcaaccttcctcatagttgcactggtggagaacattctttcagtatgttgctttgttgatatt |
397 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43921446 |
tttttccaataagttgtgttaaccttcctcatagttgcactggtggagaacattctttcagtatgttgctttgttgatatt |
43921526 |
T |
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