View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14300_low_24 (Length: 405)
Name: NF14300_low_24
Description: NF14300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14300_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 14426224 - 14426588
Alignment:
| Q |
1 |
gatgttattttatttacatattctcttcaatgttttaacattctcaatgatccacaaatatggtactttgatttatgaaatcaaggatcttatcaacctc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
14426224 |
gatgttattttatttacatattctcttcaatgttttaacattctcaatgatccacaaatatgctactttgatttatgaaatcaaggatcttatcaacctc |
14426323 |
T |
|
| Q |
101 |
gactcgaacatatctatcactcacacacttcacaaaggaaatagttgtgttgacttcatgacaaa-gactaaagcttcttcctccttggatttcatgatt |
199 |
Q |
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|||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
14426324 |
gactggaacatatccatcactcacacacttcacgaaggaaatagttgtgttgacttcatgacaaatgactagagcttcttcctccttggatttcatgatt |
14426423 |
T |
|
| Q |
200 |
tacacatctcctccgacagacttatcaatcatcctagcaatagactgtgctggaacttggttccatatagtgtagtttttctttctcatcctgcaacaat |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
14426424 |
tacacatctcctccgacagacttatcaatcatcctagcaacagactctgctggaacttggttccatatagcgtagtttttctttctcatcctgcaacaaa |
14426523 |
T |
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| Q |
300 |
aaagaataaagtaaaagggataaaattg-aaatgtaatagtttaaatgatagatacaatggaaaa |
363 |
Q |
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| T |
14426524 |
aaagaataaagtaaaagggataaaattgtaaatataatagtttaaatgatagatacaatggaaaa |
14426588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 347
Target Start/End: Original strand, 50647115 - 50647163
Alignment:
| Q |
299 |
taaagaataaagtaaaagggataaaattgaaatgtaatagtttaaatga |
347 |
Q |
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| T |
50647115 |
taaataataaagtaaatgggataaaattgaaacgtcatagtttaaatga |
50647163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 285
Target Start/End: Complemental strand, 39361096 - 39361062
Alignment:
| Q |
251 |
ggaacttggttccatatagtgtagtttttctttct |
285 |
Q |
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| T |
39361096 |
ggaacttggttccatatagcgtagtttttctttct |
39361062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 347
Target Start/End: Original strand, 34771122 - 34771171
Alignment:
| Q |
299 |
taaagaataaagtaaaagggataaaattg-aaatgtaatagtttaaatga |
347 |
Q |
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|||| |||||||||||||||||| | ||| |||||||||||||||||||| |
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| T |
34771122 |
taaataataaagtaaaagggatacatttgtaaatgtaatagtttaaatga |
34771171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 387
Target Start/End: Original strand, 16423058 - 16423139
Alignment:
| Q |
307 |
aaagtaaaagggataaaattg-aaatgtaatagtttaaatgatagatacaatggaaaatggaaaaattactccaagatcatg |
387 |
Q |
| |
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||||| || |||||||||||| |||||||||||||||||||| | ||| ||| | || || ||||| |||||||| |||||| |
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| T |
16423058 |
aaagtgaatgggataaaattgtaaatgtaatagtttaaatgaaaaataaaattggaagtgaaaaaactactccaaaatcatg |
16423139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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